Non-Coding RNA Search

Ss1.1-Mixn-0021j17.5

Sequence:


               
               GGAATATTTTCCTCCAGATCCACCCCGACTTCCCGCACTTTGTAGCCTGAAGCCTTTTCT
CTCACATTCTTTATGGTACCTTCAGGTTTGGCCAGCCTCACACTGCTACTCTGTCCACTG
TCACATCACAGCAGCCTAAGCACCCCCTGGCCAGCTCTCAGTCACTCATGTCAGAGCTAT
TCTCTCTGGCCATCTTTGGTCACTCACGTGTCACAGCAGCCCACACCAACGGGATGCAGA
CAGGTGCAATGGAAACAGTCCTTGCGGAGCCAAGACTCCCCCAGGCTGAAATGTTTCCCT
TCATAGTGGCAGGGGGCTAGGGAAGAAGAGGCCCTGTTAGAGTGCGGGAGCGGAGGAAGT
AAGGGTACACTGCCCCCCAGGTTGAGTCTCCTGGTTCCCAGCAGGAGGGAGGCTGGGTTT
TTTGACACGGGGTCATCTCTGAGCCCCCTCCTCCCAGTGCCCTCTGCTCCTGTCCTTCCC
TTGTGCCTCACCCAACTTTACCTTGAGCTTGGAAGTAGCACTTGCTGTGGACTCCTGGAT
GCTGGAGGAGCAGAGATATCACCAAGCAGATGACCCCCCAGCCGCCCAGGGTCCCTTTAG
CCTGTCCAGCCCAGAGCATCCTTAGGGCCATTCCTGCAGTAGCGCCCGTTCGGACCCTTC
TTGGCTTCTGTTCGGGCTACCCTGGTCAGGTCTCCTTGGCTTGTCTTTGTTCTCTCTCTG
AGTCTCAGCTTCTGTCTCTCTCCCCTGGGCTTCTGTCTCATACCATCTCCGTGCCCTCTG
CTCTCAGAGGCTTGGGGATGTTTATAAAGTGAGGACCCTGGCCCCCTGCTGAGTAGAGCT
GGAAAAGCTGTAACTCTGTTTCCTGAGGTGAGGGCATGAAAACAAGAGGTCTCGCTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATATTTTCCTCCAGATCCACCCCGACTTCCCGCACTTTGTAGCCTGAAGCCTTTTCT
CTCACATTCTTTATGGTACCTTCAGGTTTGGCCAGCCTCACACTGCTACTCTGTCCACTG
TCACATCACAGCAGCCTAAGCACCCCCTGGCCAGCTCTCAGTCACTCATGTCAGAGCTAT
TCTCTCTGGCCATCTTTGGTCACTCACGTGTCACAGCAGCCCACACCAACGGGATGCAGA
CAGGTGCAATGGAAACAGTCCTTGCGGAGCCAAGACTCCCCCAGGCTGAAATGTTTCCCT
TCATAGTGGCAGGGGGCTAGGGAAGAAGAGGCCCTGTTAGAGTGCGGGAGCGGAGGAAGT
AAGGGTACACTGCCCCCCAGGTTGAGTCTCCTGGTTCCCAGCAGGAGGGAGGCTGGGTTT
TTTGACACGGGGTCATCTCTGAGCCCCCTCCTCCCAGTGCCCTCTGCTCCTGTCCTTCCC
TTGTGCCTCACCCAACTTTACCTTGAGCTTGGAAGTAGCACTTGCTGTGGACTCCTGGAT
GCTGGAGGAGCAGAGATATCACCAAGCAGATGACCCCCCAGCCGCCCAGGGTCCCTTTAG
CCTGTCCAGCCCAGAGCATCCTTAGGGCCATTCCTGCAGTAGCGCCCGTTCGGACCCTTC
TTGGCTTCTGTTCGGGCTACCCTGGTCAGGTCTCCTTGGCTTGTCTTTGTTCTCTCTCTG
AGTCTCAGCTTCTGTCTCTCTCCCCTGGGCTTCTGTCTCATACCATCTCCGTGCCCTCTG
CTCTCAGAGGCTTGGGGATGTTTATAAAGTGAGGACCCTGGCCCCCTGCTGAGTAGAGCT
GGAAAAGCTGTAACTCTGTTTCCTGAGGTGAGGGCATGAAAACAAGAGGTCTCGCTTCTC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               39-158, - strand, RNAz p=0.863019
               

               
               508-693, - strand, RNAz p=0.691959
               

               
               770-878, - strand, RNAz p=0.887214

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-158, - strand, RNAz p=0.863019
               

               
               508-693, - strand, RNAz p=0.691959
               

               
               770-878, - strand, RNAz p=0.887214

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               583-658, - strand, RNAmicro p=0.952648

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               583-658, - strand, RNAmicro p=0.952648

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-693, gnl|bosTau2|chr8 (28486732-28487408)
               

               
               1-693, gnl|Hg17|chr9 (35743449-35744184)
               

               
               1-693, gnl|Mm7|chr4 (43597460-43598207)
               


               
               731-897, gnl|bosTau2|chr8 (28487406-28487570)
               

               
               731-897, gnl|canFam2|chr11 (55310593-55311180)
               

               
               731-897, gnl|dasNov1|scaffold_62744 (3879-3311)
               

               
               731-897, gnl|echTel1|scaffold_98608 (3881-3328)
               

               
               731-897, gnl|galGal2|chrZ_random (8413674-8413053)
               

               
               731-897, gnl|hg17|chr9 (35744280-35744859)
               

               
               731-897, gnl|loxAfr1|scaffold_47560 (6289-6865)
               

               
               731-897, gnl|mm7|chr4 (43598217-43598772)
               

               
               731-897, gnl|monDom2|scaffold_17 (45772528-45771933)
               

               
               731-897, gnl|oryCun1|scaffold_85530 (600-1182)
               

               
               731-897, gnl|panTro1|chr11 (36303390-36303969)
               

               
               731-897, gnl|rheMac2|chr15 (41766927-41766348)
               

               
               731-897, gnl|rn3|chr5 (60063318-60063841)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-693, gnl|bosTau2|chr8 (28486732-28487408)
               

               
               1-693, gnl|Hg17|chr9 (35743449-35744184)
               

               
               1-693, gnl|Mm7|chr4 (43597460-43598207)
               


               
               731-897, gnl|bosTau2|chr8 (28487406-28487570)
               

               
               731-897, gnl|canFam2|chr11 (55310593-55311180)
               

               
               731-897, gnl|dasNov1|scaffold_62744 (3879-3311)
               

               
               731-897, gnl|echTel1|scaffold_98608 (3881-3328)
               

               
               731-897, gnl|galGal2|chrZ_random (8413674-8413053)
               

               
               731-897, gnl|hg17|chr9 (35744280-35744859)
               

               
               731-897, gnl|loxAfr1|scaffold_47560 (6289-6865)
               

               
               731-897, gnl|mm7|chr4 (43598217-43598772)
               

               
               731-897, gnl|monDom2|scaffold_17 (45772528-45771933)
               

               
               731-897, gnl|oryCun1|scaffold_85530 (600-1182)
               

               
               731-897, gnl|panTro1|chr11 (36303390-36303969)
               

               
               731-897, gnl|rheMac2|chr15 (41766927-41766348)
               

               
               731-897, gnl|rn3|chr5 (60063318-60063841)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	39-158, - strand, RNAz p=0.863019
	508-693, - strand, RNAz p=0.691959
	770-878, - strand, RNAz p=0.887214

	1-693, gnl\|bosTau2\|chr8 (28486732-28487408)
	1-693, gnl\|Hg17\|chr9 (35743449-35744184)
	1-693, gnl\|Mm7\|chr4 (43597460-43598207)

	731-897, gnl\|bosTau2\|chr8 (28487406-28487570)
	731-897, gnl\|canFam2\|chr11 (55310593-55311180)
	731-897, gnl\|dasNov1\|scaffold_62744 (3879-3311)
	731-897, gnl\|echTel1\|scaffold_98608 (3881-3328)
	731-897, gnl\|galGal2\|chrZ_random (8413674-8413053)
	731-897, gnl\|hg17\|chr9 (35744280-35744859)
	731-897, gnl\|loxAfr1\|scaffold_47560 (6289-6865)
	731-897, gnl\|mm7\|chr4 (43598217-43598772)
	731-897, gnl\|monDom2\|scaffold_17 (45772528-45771933)
	731-897, gnl\|oryCun1\|scaffold_85530 (600-1182)
	731-897, gnl\|panTro1\|chr11 (36303390-36303969)
	731-897, gnl\|rheMac2\|chr15 (41766927-41766348)
	731-897, gnl\|rn3\|chr5 (60063318-60063841)