Non-Coding RNA Search

Ss1.1-Mixn-0021k14.5

Sequence:


               
               TTGGACCTCATCAAGACCGGGCGTTCAGTGGTGCTGACATCGCACAGCATGGAGGAGTGT
GAGGCGCTGTGCACGCGCCTGGCCATCATGGTGAACGGGCGCCTGCGCTGTCTGGGCAGC
ATCCAGCACCTGAAGAACCGGTTCGGGGACGGCTACATGATCACGGTGAGGACCAGGAGC
AGCCAGAACGTGAAGGACGTGGTGCGGTTCTTCAACAGGAACTTCCCGGAGGCCGTGCTC
AAGGAGCGGCACCACACGAAGGTGCAGTACCAGCTCAAGTCGGAGCACATCTCGCTGGCG
CAGGTGTTCAGCAAGATGGAGCAGGTGGTGGGCGTGCTGGGCATCGAGGACTACTCGGTC
AGCCAGACCACCCTGGACAACGTGTTCGTGAACTTTGCCAAGAAACAGAGCGACAACCTG
GAGCAGCAGGAGACAGAGCCGCCCTCGGCCCTGCAGTCCCCCCTGGGCCGCCTGCTCAGC
CTGTTCCGGCCGCGGCCCACCCCCACCGAGCTGCGCGCGCTCGTGGCCGATGAGCCCGAG
GACCTGGACACGGAGGATGAGGGTCTCATCAGCTTCGAGGAGGAGCGGGCCCAGCTCTCC
TTCAACACGGACACGCTGTGCTGAGCGCAGGAGCCGGATTGAGCGCAGGAGCCGGATCGA
GGACAGGCCGTGGGAACGGAAGCCGGGCGGCGGCCGAGGTCCCACCCTGTGCCCCCAGTG
CCCCCCTGCCAGGCCCTGGAGTGGCAGGGCACAGGCCGAGGAGACAGAGCCGCAGCCGAC
CCCGGGTTCAGAGACGGGCAGGTGGGGGAGCAGAGCCTGGGGACAGCAGCCACCAGACCA
GCAGAGAGGCCAAGGGGGTGGGGGCCTCACCACGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGACCTCATCAAGACCGGGCGTTCAGTGGTGCTGACATCGCACAGCATGGAGGAGTGT
GAGGCGCTGTGCACGCGCCTGGCCATCATGGTGAACGGGCGCCTGCGCTGTCTGGGCAGC
ATCCAGCACCTGAAGAACCGGTTCGGGGACGGCTACATGATCACGGTGAGGACCAGGAGC
AGCCAGAACGTGAAGGACGTGGTGCGGTTCTTCAACAGGAACTTCCCGGAGGCCGTGCTC
AAGGAGCGGCACCACACGAAGGTGCAGTACCAGCTCAAGTCGGAGCACATCTCGCTGGCG
CAGGTGTTCAGCAAGATGGAGCAGGTGGTGGGCGTGCTGGGCATCGAGGACTACTCGGTC
AGCCAGACCACCCTGGACAACGTGTTCGTGAACTTTGCCAAGAAACAGAGCGACAACCTG
GAGCAGCAGGAGACAGAGCCGCCCTCGGCCCTGCAGTCCCCCCTGGGCCGCCTGCTCAGC
CTGTTCCGGCCGCGGCCCACCCCCACCGAGCTGCGCGCGCTCGTGGCCGATGAGCCCGAG
GACCTGGACACGGAGGATGAGGGTCTCATCAGCTTCGAGGAGGAGCGGGCCCAGCTCTCC
TTCAACACGGACACGCTGTGCTGAGCGCAGGAGCCGGATTGAGCGCAGGAGCCGGATCGA
GGACAGGCCGTGGGAACGGAAGCCGGGCGGCGGCCGAGGTCCCACCCTGTGCCCCCAGTG
CCCCCCTGCCAGGCCCTGGAGTGGCAGGGCACAGGCCGAGGAGACAGAGCCGCAGCCGAC
CCCGGGTTCAGAGACGGGCAGGTGGGGGAGCAGAGCCTGGGGACAGCAGCCACCAGACCA
GCAGAGAGGCCAAGGGGGTGGGGGCCTCACCACGCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55962679|emb|CAI12765.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55962679|emb|CAI12765.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               97-251, gnl|bosTau2|chr11 (86330388-86330234)
               

               
               97-251, gnl|Hg17|chr9 (137179394-137179223)
               

               
               97-251, gnl|Mm7|chr2 (25454072-25454211)
               


               
               377-589, gnl|bosTau2|chr11 (86329958-86329746)
               

               
               377-589, gnl|Hg17|chr9 (137178916-137178704)
               

               
               377-589, gnl|Mm7|chr2 (25454506-25454712)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-251, gnl|bosTau2|chr11 (86330388-86330234)
               

               
               97-251, gnl|Hg17|chr9 (137179394-137179223)
               

               
               97-251, gnl|Mm7|chr2 (25454072-25454211)
               


               
               377-589, gnl|bosTau2|chr11 (86329958-86329746)
               

               
               377-589, gnl|Hg17|chr9 (137178916-137178704)
               

               
               377-589, gnl|Mm7|chr2 (25454506-25454712)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	97-251, gnl\|bosTau2\|chr11 (86330388-86330234)
	97-251, gnl\|Hg17\|chr9 (137179394-137179223)
	97-251, gnl\|Mm7\|chr2 (25454072-25454211)

	377-589, gnl\|bosTau2\|chr11 (86329958-86329746)
	377-589, gnl\|Hg17\|chr9 (137178916-137178704)
	377-589, gnl\|Mm7\|chr2 (25454506-25454712)