Non-Coding RNA Search

Ss1.1-Mixn-0021m07.5

Sequence:


               
               AAAAGTACCCTAAGTGGCATTTTACACAGCTTACAAGTATTGTTATATCTAATCCTATTT
TAAAAGATTTTTTGGTAATATTAAGCTTAAATACTGGTAACGCTGATCCAGTATACTCAA
GCTGCACAACCTGTATATTGTATGCATTGGTGTGTAGAAGGCTGTTCATTTCAACCTTTT
TTAAAATTGTGTTTTTTAGTAAAATGGCTTATTTTTTTCCCAAAGGTGGAATTTAACATT
TTGTAATGATAAATATAAAAATACCTATCATCCTCCAATCATTTTAAGGTTAATTAAAGT
GAAAACCTTAAAGAAATTCCAACACGCTTTTAAAAAGAATATCTGCCCTCTCACACTTTT
ATGTATTTATTTTTCTTACATACCATCTTTTAACTTAGAGATAGCATTTTTTGCCCCCTT
TATCCTTGTGTTTTTTCGAGAGAGTAAAAGCTTTGTATTTCTTTCTTTAAAAAAAAAATT
TTTTTTTTTTTTAAAGAAGCAGCCACTTGAACCCTCAGTAAGGGCTGTTGCCTCAGCATG
GCATACTTCATCTGTTCCCATTTGTGCCATCTGCTGTGATGTCGTCACTTCTATGGCGTT
AATTCCCTGCCACTACAGATCTTTTGAAGACTGATGGAATACTGTTGTCTGTTAGAATGC
TTCAGACTACAGATGTAATTAAAGGCTTTTCTTAATATGTTTTAACCAAAGATGTGGAGC
AATCCAAGCCACATATCTTCTACATTAAATTTGTCCATTTTGGTTATTTTCATCATCGGG
TATTGCATTTTGCCTTCCCTGTTCATACCTCAAATTGATCCATACCTCAGTTGAATTCAG
AGAGGTCAGCTAAGAGACGGATTCTGTGGTGGTTTGAATGCAGTGCCAGTGTTCTCTCAG
AGCGAAGCAGCGCTGGGTCACTGGAGGCATAGGACTTGGATTGCTTCAGATGGTTTGCTC
TGCCATTTTTCTTCTTTTTCTTTTTTGGGGACTTGTTTCCATTAAATGACAGTAATTAAA
ATAGCTTGTAAATGAGGGCATACAAGCATTTGCAACAAATATTCAAATAGAGGCTCACAG
CGGCATAAGCTGGACTTTGTCGCCACTAGATGACAAGATGTTATAACTAAGTTAAACCAC
ATCTGTGTATCTCAAGGGACTTAATTCAGCTGTCTGTAGTGAATAAAAGTGGGGAATTTT
CAAAAGTTTCTCCTGCTGGAAATAAGGTATAATTTGTATTTTGCAGACAATTCAGTAAAG
TTACTGGCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGTACCCTAAGTGGCATTTTACACAGCTTACAAGTATTGTTATATCTAATCCTATTT
TAAAAGATTTTTTGGTAATATTAAGCTTAAATACTGGTAACGCTGATCCAGTATACTCAA
GCTGCACAACCTGTATATTGTATGCATTGGTGTGTAGAAGGCTGTTCATTTCAACCTTTT
TTAAAATTGTGTTTTTTAGTAAAATGGCTTATTTTTTTCCCAAAGGTGGAATTTAACATT
TTGTAATGATAAATATAAAAATACCTATCATCCTCCAATCATTTTAAGGTTAATTAAAGT
GAAAACCTTAAAGAAATTCCAACACGCTTTTAAAAAGAATATCTGCCCTCTCACACTTTT
ATGTATTTATTTTTCTTACATACCATCTTTTAACTTAGAGATAGCATTTTTTGCCCCCTT
TATCCTTGTGTTTTTTCGAGAGAGTAAAAGCTTTGTATTTCTTTCTTTAAAAAAAAAATT
TTTTTTTTTTTTAAAGAAGCAGCCACTTGAACCCTCAGTAAGGGCTGTTGCCTCAGCATG
GCATACTTCATCTGTTCCCATTTGTGCCATCTGCTGTGATGTCGTCACTTCTATGGCGTT
AATTCCCTGCCACTACAGATCTTTTGAAGACTGATGGAATACTGTTGTCTGTTAGAATGC
TTCAGACTACAGATGTAATTAAAGGCTTTTCTTAATATGTTTTAACCAAAGATGTGGAGC
AATCCAAGCCACATATCTTCTACATTAAATTTGTCCATTTTGGTTATTTTCATCATCGGG
TATTGCATTTTGCCTTCCCTGTTCATACCTCAAATTGATCCATACCTCAGTTGAATTCAG
AGAGGTCAGCTAAGAGACGGATTCTGTGGTGGTTTGAATGCAGTGCCAGTGTTCTCTCAG
AGCGAAGCAGCGCTGGGTCACTGGAGGCATAGGACTTGGATTGCTTCAGATGGTTTGCTC
TGCCATTTTTCTTCTTTTTCTTTTTTGGGGACTTGTTTCCATTAAATGACAGTAATTAAA
ATAGCTTGTAAATGAGGGCATACAAGCATTTGCAACAAATATTCAAATAGAGGCTCACAG
CGGCATAAGCTGGACTTTGTCGCCACTAGATGACAAGATGTTATAACTAAGTTAAACCAC
ATCTGTGTATCTCAAGGGACTTAATTCAGCTGTCTGTAGTGAATAAAAGTGGGGAATTTT
CAAAAGTTTCTCCTGCTGGAAATAAGGTATAATTTGTATTTTGCAGACAATTCAGTAAAG
TTACTGGCTTTC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               407-597, - strand, RNAz p=0.966349
               

               
               677-796, - strand, RNAz p=0.649928
               

               
               1075-1193, + strand, RNAz p=0.797733

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-597, - strand, RNAz p=0.966349
               

               
               677-796, - strand, RNAz p=0.649928
               

               
               1075-1193, + strand, RNAz p=0.797733

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1092-1200, + strand, RNAmicro p=0.966814

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1092-1200, + strand, RNAmicro p=0.966814

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-1272, gnl|bosTau2|chr7 (56594804-56596063)
               

               
               13-1272, gnl|Hg17|chr5 (88051078-88049821)
               

               
               13-1272, gnl|Mm7|chr13 (80740805-80742046)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1272, gnl|bosTau2|chr7 (56594804-56596063)
               

               
               13-1272, gnl|Hg17|chr5 (88051078-88049821)
               

               
               13-1272, gnl|Mm7|chr13 (80740805-80742046)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fcc (0.791139)
               

               
               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.791139)
               

               
               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	407-597, - strand, RNAz p=0.966349
	677-796, - strand, RNAz p=0.649928
	1075-1193, + strand, RNAz p=0.797733

	13-1272, gnl\|bosTau2\|chr7 (56594804-56596063)
	13-1272, gnl\|Hg17\|chr5 (88051078-88049821)
	13-1272, gnl\|Mm7\|chr13 (80740805-80742046)

	fcc (0.791139)
	ecc (0.23007)
	ton (0.1755)
	tbr (0.154178)
	isp (0.150376)
	lin (0.145603)
	lnt (0.142308)
	nca (0.136874)
	bla (0.124347)
	eru (0.120048)
	cty (0.10408)