Non-Coding RNA Search

Ss1.1-Mixn-0021m19.5

Sequence:


               
               CTTTCTTCTCTCCCCGCGCCTGACTGAGAGATGTCTGGCCGAGGCAAGCAGGGAGGTAAG
GCGCGCGCAAAAGCGAAGTCGCGCTCCTCGCGCGCAGGCCTGCAGTTTCCTGTGGGTCGA
GTGCATCGGCTTCTTCGCAAGGGTAACTATTCTGAGCGCGTGGGTGCGGGCGCGCCTGTG
TATTTAGCTGCGGTGCTGGAGTACCTGACGGCTGAGATCCTGGAGTTGGCAGGCAACGCG
GCGCGCGACAACAAGAAGACTCGCATTATACCGCGCCACCTGCAGTTGGCCATCCGAAAC
GACGAGGAGCTTAACAAGCTTCTGGGCCGCGTGACCATCGCTCAGGGCGGCGTCCTGCCC
AACATCCAGGCCGTGCTTCTGCCGAAGAAGACCGAAAGCCACCACAAGGCCAAGGGCAAG
TGAGGCCGCGGAGGCGGGTCGGAAACGGCCGTGCGCCCCCTGGGGGCCCCGTGACACCAA
AGGCTCTTTTCAGAGCCACCCACAGTCTCAAGAAAAGAGCAGCACTGGCTGAGGGCTGCT
TACTAGTGATGGCGTTCCACAGCTCACCTGCTCAAGGCAGGGCTCGCGGGAAATCGAACC
TGAGGTACGATTGGGGTGCGCCTAGTGGCACAGAGGGCTGAGAGTTCATTTACTGCGAGG
AATGTCGCCGAAAATGCAACTCGTTTCCTTGAATCTTTCTCCCAAGCCCTCATGAGGTTT
CAGTCCTATTCATCCTGAAGATGTGTATGTTATTACCAGTGACAAGCAGCTTTAGCTCCG
TAAAGTGTCACTGTGTGACATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTTCTCTCCCCGCGCCTGACTGAGAGATGTCTGGCCGAGGCAAGCAGGGAGGTAAG
GCGCGCGCAAAAGCGAAGTCGCGCTCCTCGCGCGCAGGCCTGCAGTTTCCTGTGGGTCGA
GTGCATCGGCTTCTTCGCAAGGGTAACTATTCTGAGCGCGTGGGTGCGGGCGCGCCTGTG
TATTTAGCTGCGGTGCTGGAGTACCTGACGGCTGAGATCCTGGAGTTGGCAGGCAACGCG
GCGCGCGACAACAAGAAGACTCGCATTATACCGCGCCACCTGCAGTTGGCCATCCGAAAC
GACGAGGAGCTTAACAAGCTTCTGGGCCGCGTGACCATCGCTCAGGGCGGCGTCCTGCCC
AACATCCAGGCCGTGCTTCTGCCGAAGAAGACCGAAAGCCACCACAAGGCCAAGGGCAAG
TGAGGCCGCGGAGGCGGGTCGGAAACGGCCGTGCGCCCCCTGGGGGCCCCGTGACACCAA
AGGCTCTTTTCAGAGCCACCCACAGTCTCAAGAAAAGAGCAGCACTGGCTGAGGGCTGCT
TACTAGTGATGGCGTTCCACAGCTCACCTGCTCAAGGCAGGGCTCGCGGGAAATCGAACC
TGAGGTACGATTGGGGTGCGCCTAGTGGCACAGAGGGCTGAGAGTTCATTTACTGCGAGG
AATGTCGCCGAAAATGCAACTCGTTTCCTTGAATCTTTCTCCCAAGCCCTCATGAGGTTT
CAGTCCTATTCATCCTGAAGATGTGTATGTTATTACCAGTGACAAGCAGCTTTAGCTCCG
TAAAGTGTCACTGTGTGACATTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BFU2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BFU2_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-120, - strand, RNAz p=0.95599
               

               
               70-555, + strand, RNAz p=0.706785

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.95599
               

               
               70-555, + strand, RNAz p=0.706785

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-802, gnl|bosTau2|chr7 (2957637-2956852)
               

               
               1-802, gnl|Hg17|chr1 (224952283-224951481)
               


               
               31-423, gnl|bosTau2|chr12 (1673229-1672837)
               

               
               31-423, gnl|Hg17|chr6 (26380762-26380415)
               

               
               31-423, gnl|Mm7|chr13 (22899900-22900292)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-802, gnl|bosTau2|chr7 (2957637-2956852)
               

               
               1-802, gnl|Hg17|chr1 (224952283-224951481)
               


               
               31-423, gnl|bosTau2|chr12 (1673229-1672837)
               

               
               31-423, gnl|Hg17|chr6 (26380762-26380415)
               

               
               31-423, gnl|Mm7|chr13 (22899900-22900292)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-120, - strand, RNAz p=0.95599
	70-555, + strand, RNAz p=0.706785

	1-802, gnl\|bosTau2\|chr7 (2957637-2956852)
	1-802, gnl\|Hg17\|chr1 (224952283-224951481)

	31-423, gnl\|bosTau2\|chr12 (1673229-1672837)
	31-423, gnl\|Hg17\|chr6 (26380762-26380415)
	31-423, gnl\|Mm7\|chr13 (22899900-22900292)