Non-Coding RNA Search

Ss1.1-Mixn-0021o10.5

Sequence:


               
               ATTAGAAGGTGTCTGCTGTAACCACCAGTGCAAGATAATTCAGTACTTGTGTCCGGTCTC
ATTCAGAGCCCTGCTGCTCTTTATCAAAGCAGGAGGAGGAGGAGGCATCTGGGGGGACAT
TGTCATGTTCTCAGGCCAAGCATTTTGATTTGCTTGTTTCACTGAGCAAATCTGGAACCA
GCCGCTCACCTCAGGCCAGAGGGGACAACCTCTTTTGCTTCCCTGAGCGGTGTCCTCTGC
CCACATTCCATTCTCAGCCTCAGTTCTGCAGCACTTTGGGTTTCCTTCAGTTCTGGAGGA
CCAACTGGACGGTCGAGTCCCAGCGGGGGTCATGGGAGCGCTCTTGGTCGGAGTCCTGAT
CTTGAGCGGGTGTGAACTGTTGCTTGGCAGTGCAAGTGCCTTGTCCTCACCTCGCTCCCA
TCTCTAGGGACATAGAGTTTGTACCAAGAACTGTCTCTCTTTGCCTCCCATTCACACTGC
GTTGACTCACCCACCCAAAGCAGTTTCCTTTCAATTGGCCAGTTCTTCTGTATTCATGTG
CTCTATTAATTCAGGTTTATGCCTCCTTCTGTAGCCCATTTACCAAGAACATGGGGAAAT
TAATCCTTTTAGACAGGAAATCTCTGTATCATCAGTGTTTTTGATAAGAGTCAGTGGAGA
TGCTCAAAACATAACACTTTGGCTCGGGGGTTCTTTTGTTTGTTTTTTTAACCTTTGTGT
TAAAAGATGGGAATTGGGGAGTTGAATAGGATTTTTCCATAGTCCGACTGTATAGCAAAC
ACTGTCTTGATTCAGGCATTAGTTTTCACACTTCAGGTCTGACTGGGTGCTGAGGACATG
TCCCTCTTGGAAGGCTGACGGCCGAACAGTGGGGACTGCTCCCTTGGAGCCCTCAAAGCT
GTAGATAAGCTGTGTGAATGGACAGATGTAATCTTGTCCTGGATGCTAATATAAGGGGAT
GTGGTTTATATGACCCTCTTATTCCTCTGAGAAGTTTTTCTTCCTATTCTGAGTCAAAAG
CAGACCACACTGTTCAGATCAAGTCACAATTAGATGGGATCCGTTTGGTCTGGCTGATCT
GGCTTACGGCCATGCTGCAGTCTGACTGGAGAATCGGCAACAGGTTTCAAACCCTCTTCC
CTCCTTTTTTTTCTTAGAATTTGAATGACCAGATTCTCCCCACCCCTTTTGTGTTGTTGA
AGAGGAGAACTAAACCTGAGACTAACTTTAATAAAGCCCCTTGACCTTTTTGTCGTGTAA
GTTTTGTGCCAGGGAAGGCCCTGTCCCAGTGGTTCTTACCTTCTCTGCATCGTTGGCAGA
GCAGAGGGATGCATTCTTTTCATTTCTCTCCTCACTTCCAGGACCTGCCAGAAGCAGGGA
AGAGCCCCTGGGTTATGTCTGAACTTAGCTTCCAGCATGTGGGTGGTGTGAGTGCACAGG
GGTTCAGGGGCTGGATGTTGCTCACATTGTGCTTTTGGGCATTTTGACTCTGCACTTGGG
ACTGTACAGTTACTCATGTCATTGTAATGATTTCACTCCTGACTGTGACATTTTTATCAA
ATGTGTGAATAAATACGTAAGGATTGGGATGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAGAAGGTGTCTGCTGTAACCACCAGTGCAAGATAATTCAGTACTTGTGTCCGGTCTC
ATTCAGAGCCCTGCTGCTCTTTATCAAAGCAGGAGGAGGAGGAGGCATCTGGGGGGACAT
TGTCATGTTCTCAGGCCAAGCATTTTGATTTGCTTGTTTCACTGAGCAAATCTGGAACCA
GCCGCTCACCTCAGGCCAGAGGGGACAACCTCTTTTGCTTCCCTGAGCGGTGTCCTCTGC
CCACATTCCATTCTCAGCCTCAGTTCTGCAGCACTTTGGGTTTCCTTCAGTTCTGGAGGA
CCAACTGGACGGTCGAGTCCCAGCGGGGGTCATGGGAGCGCTCTTGGTCGGAGTCCTGAT
CTTGAGCGGGTGTGAACTGTTGCTTGGCAGTGCAAGTGCCTTGTCCTCACCTCGCTCCCA
TCTCTAGGGACATAGAGTTTGTACCAAGAACTGTCTCTCTTTGCCTCCCATTCACACTGC
GTTGACTCACCCACCCAAAGCAGTTTCCTTTCAATTGGCCAGTTCTTCTGTATTCATGTG
CTCTATTAATTCAGGTTTATGCCTCCTTCTGTAGCCCATTTACCAAGAACATGGGGAAAT
TAATCCTTTTAGACAGGAAATCTCTGTATCATCAGTGTTTTTGATAAGAGTCAGTGGAGA
TGCTCAAAACATAACACTTTGGCTCGGGGGTTCTTTTGTTTGTTTTTTTAACCTTTGTGT
TAAAAGATGGGAATTGGGGAGTTGAATAGGATTTTTCCATAGTCCGACTGTATAGCAAAC
ACTGTCTTGATTCAGGCATTAGTTTTCACACTTCAGGTCTGACTGGGTGCTGAGGACATG
TCCCTCTTGGAAGGCTGACGGCCGAACAGTGGGGACTGCTCCCTTGGAGCCCTCAAAGCT
GTAGATAAGCTGTGTGAATGGACAGATGTAATCTTGTCCTGGATGCTAATATAAGGGGAT
GTGGTTTATATGACCCTCTTATTCCTCTGAGAAGTTTTTCTTCCTATTCTGAGTCAAAAG
CAGACCACACTGTTCAGATCAAGTCACAATTAGATGGGATCCGTTTGGTCTGGCTGATCT
GGCTTACGGCCATGCTGCAGTCTGACTGGAGAATCGGCAACAGGTTTCAAACCCTCTTCC
CTCCTTTTTTTTCTTAGAATTTGAATGACCAGATTCTCCCCACCCCTTTTGTGTTGTTGA
AGAGGAGAACTAAACCTGAGACTAACTTTAATAAAGCCCCTTGACCTTTTTGTCGTGTAA
GTTTTGTGCCAGGGAAGGCCCTGTCCCAGTGGTTCTTACCTTCTCTGCATCGTTGGCAGA
GCAGAGGGATGCATTCTTTTCATTTCTCTCCTCACTTCCAGGACCTGCCAGAAGCAGGGA
AGAGCCCCTGGGTTATGTCTGAACTTAGCTTCCAGCATGTGGGTGGTGTGAGTGCACAGG
GGTTCAGGGGCTGGATGTTGCTCACATTGTGCTTTTGGGCATTTTGACTCTGCACTTGGG
ACTGTACAGTTACTCATGTCATTGTAATGATTTCACTCCTGACTGTGACATTTTTATCAA
ATGTGTGAATAAATACGTAAGGATTGGGATGAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1461-1567, - strand, RNAz p=0.988414

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1461-1567, - strand, RNAz p=0.988414

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               63-1593, gnl|bosTau2|chr11 (2631019-2632571)
               

               
               63-1593, gnl|Hg17|chr2 (96274190-96272476)
               

               
               63-1593, gnl|Mm7|chr2 (127038292-127039790)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-1593, gnl|bosTau2|chr11 (2631019-2632571)
               

               
               63-1593, gnl|Hg17|chr2 (96274190-96272476)
               

               
               63-1593, gnl|Mm7|chr2 (127038292-127039790)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               hlv (0.417769)
               

               
               lnt (0.284616)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.417769)
               

               
               lnt (0.284616)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	63-1593, gnl\|bosTau2\|chr11 (2631019-2632571)
	63-1593, gnl\|Hg17\|chr2 (96274190-96272476)
	63-1593, gnl\|Mm7\|chr2 (127038292-127039790)

	hlv (0.417769)
	lnt (0.284616)
	che (0.272628)
	fce (0.271592)
	ssp (0.271039)
	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	nlu (0.191681)
	ton (0.1755)
	mcp (0.170648)
	cki (0.165235)
	spl (0.143184)
	pla (0.133672)
	thg (0.126791)
	cly (0.120642)
	ecc (0.115035)
	cbl (0.114797)