Non-Coding RNA Search

Ss1.1-Mixn-0021o13.5

Sequence:


               
               CCTTGGCAATGAGTCTGCTTGTTCAGAGCCCATGTTTGTAAGATAGAACCTAGAGCATTT
TCAGTTCCTAAAGCAAATTTTTGTATAAATTATTTGGGATTGCCACCACAGTTCATATTG
TAGCACTGTGGCTCAGACAGAGGATCAGGATACTGCGGATCCCACGATTAACAAGAAAAG
GATCTGAGAGTCAGGGAGTTTCATGGTTTTCTAACTCTGTTTACCACAGGGTCCCTGGCC
CAAAGGAAGTCTTTCTTGGACCCTCAGTAGATATGCAGGTAAAGGAGAGGGCTGTGGGGT
GGGGTGGAGGTAGTGATTCTGAGCCCAGAAGCCTGCCTCTTCCCCTCTTAAGCTTGTATT
GAAAACAGTAGCTCTATTACTGGCTTTTGCCACATTCTGTAGCTAGAGAGGCCGAGGTCA
GAGGGAGGGGTCCTGGCCTCAAGGCCACGTGAGGGGTCCTGGCCAGGCTTCCCAAACCAC
AGACCGGCTCTGGATTTTGCGCTTTTGCTCCAAGCCGCTTGTGTGTGAACCACTGCCGTT
TGAACAAACTGTGCGATTCCAACTGCCCACATCCAGAAATATTTTATTAAAAAGGTTTTG
TTTGTGTTTTCATAATAGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGGCAATGAGTCTGCTTGTTCAGAGCCCATGTTTGTAAGATAGAACCTAGAGCATTT
TCAGTTCCTAAAGCAAATTTTTGTATAAATTATTTGGGATTGCCACCACAGTTCATATTG
TAGCACTGTGGCTCAGACAGAGGATCAGGATACTGCGGATCCCACGATTAACAAGAAAAG
GATCTGAGAGTCAGGGAGTTTCATGGTTTTCTAACTCTGTTTACCACAGGGTCCCTGGCC
CAAAGGAAGTCTTTCTTGGACCCTCAGTAGATATGCAGGTAAAGGAGAGGGCTGTGGGGT
GGGGTGGAGGTAGTGATTCTGAGCCCAGAAGCCTGCCTCTTCCCCTCTTAAGCTTGTATT
GAAAACAGTAGCTCTATTACTGGCTTTTGCCACATTCTGTAGCTAGAGAGGCCGAGGTCA
GAGGGAGGGGTCCTGGCCTCAAGGCCACGTGAGGGGTCCTGGCCAGGCTTCCCAAACCAC
AGACCGGCTCTGGATTTTGCGCTTTTGCTCCAAGCCGCTTGTGTGTGAACCACTGCCGTT
TGAACAAACTGTGCGATTCCAACTGCCCACATCCAGAAATATTTTATTAAAAAGGTTTTG
TTTGTGTTTTCATAATAGAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               353-466, + strand, RNAz p=0.56273

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-466, + strand, RNAz p=0.56273

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016563, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016563, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               297-618, gnl|bosTau2|chr10 (8422500-8422167)
               

               
               297-618, gnl|Hg17|chr15 (63133060-63132730)
               

               
               297-618, gnl|Mm7|chr9 (65441852-65442347)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               297-618, gnl|bosTau2|chr10 (8422500-8422167)
               

               
               297-618, gnl|Hg17|chr15 (63133060-63132730)
               

               
               297-618, gnl|Mm7|chr9 (65441852-65442347)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fbs (0.175346)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               sug (0.127291)
               

               
               eje (0.0988338)

	297-618, gnl\|bosTau2\|chr10 (8422500-8422167)
	297-618, gnl\|Hg17\|chr15 (63133060-63132730)
	297-618, gnl\|Mm7\|chr9 (65441852-65442347)