Non-Coding RNA Search

Ss1.1-Mixn-0021p08.5

Sequence:


               
               TTTTTATCATGATTGCGAGAATCTGTAAATAGTGTACAAAGGTATATTTCTTTGAAAATT
TACTTCCACTGTACAGAACCAATTTGATAAAGGTTTAGCTCTAGCTATGTGAAAGCCTTG
TTAGCTGTGGATAATAATATAACACATTGGAACAACAAATGTAAGATTGGTAAAGTTGGG
AGATACATACTTCTCTAATTACAAATGGAAGAACTAGAATCTTAGATTAAATGCTCAGCT
GTGCTCTGATTAAATCTACATAAAATGTAAATGTCAATTTGATTTAAAATTTTTTTATGT
GACTACTTTTCTTTCTGAAAAATAATCCATTACAGTTTCGTATGTTTTATACATTTCAGT
AGGGAGGGTGGATCTCAGAACCTGAATAATGGAACAGAGATGCATTTCAACTTAACATAG
ATTCATTCAGATCTGTCATTAATTCCTGTGCACATTATTTAGATATGACTAGGCTGATTT
TAAGCTAATGAGTGAAGGTATATTCACCTCCTTAAGAGAATCTTCCACACACTGAAATTC
CACAAAGACAATTTCCAAACCTTCTATCATTCCATCTAAAACCTTAAAATCTCTACTGGA
CTACACAAAAATACTGCCAGGTTTATAAATGGTTGCCTATACGAATTTTTATACCTACCA
CTATTAATTTGTACCGAGTTAGCAATTAGCAACCCTATACCGTTGTCAAAAATACTAGCA
GATTAAATCTACATTGCTTTTGGTGTCAGATTATGCCTCTGTGCATCTAAAAATATTTAA
TACTCATGTGTTCTCACAGAAAAAAAATGTACCTTTCTCATTAGAATACTAAAATGCTTT
AGTGCATATTATGATTTGTTATTAGCGTGAATTTTGATGTAGAGGAGAATGCAGTGTGCT
AAGTAATATGCCAGTGTTTTGCTACATTCATTTGTAGAAAAAATCATCCTTGAAAATATG
AATGCATGAAAACCTATTTTGTAAAATAAACTGCTCATGGGGAAGGGGAGTTTGCCTTTA
ATAATGTTTCACTACTTACCATAGAATCTCTACTTAAAAATTGCATTCCCAAGACTCTCA
TGTAGTTTTTGTACCTTACTTCCTGGTATATCAAGGGAGATATACCTCTAGAGAGAGAGA
GAGAGAAATAATTTGGTGAGCATGTCTTACTTCCCTGACTCAGTAGGGCATTAAGCTTGG
TTGAAATTGCTGCAGACAATGTTTTGCATTACTTTATTAATAGACTGGGATAGGGTTAAG
GGGTTGTGCTGGAAAAATGTAAAAAAGCCAGAAGTGAGAAATATGTATTTCACTCTAAAG
GAAAATTCTTTAAAAATAAATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTATCATGATTGCGAGAATCTGTAAATAGTGTACAAAGGTATATTTCTTTGAAAATT
TACTTCCACTGTACAGAACCAATTTGATAAAGGTTTAGCTCTAGCTATGTGAAAGCCTTG
TTAGCTGTGGATAATAATATAACACATTGGAACAACAAATGTAAGATTGGTAAAGTTGGG
AGATACATACTTCTCTAATTACAAATGGAAGAACTAGAATCTTAGATTAAATGCTCAGCT
GTGCTCTGATTAAATCTACATAAAATGTAAATGTCAATTTGATTTAAAATTTTTTTATGT
GACTACTTTTCTTTCTGAAAAATAATCCATTACAGTTTCGTATGTTTTATACATTTCAGT
AGGGAGGGTGGATCTCAGAACCTGAATAATGGAACAGAGATGCATTTCAACTTAACATAG
ATTCATTCAGATCTGTCATTAATTCCTGTGCACATTATTTAGATATGACTAGGCTGATTT
TAAGCTAATGAGTGAAGGTATATTCACCTCCTTAAGAGAATCTTCCACACACTGAAATTC
CACAAAGACAATTTCCAAACCTTCTATCATTCCATCTAAAACCTTAAAATCTCTACTGGA
CTACACAAAAATACTGCCAGGTTTATAAATGGTTGCCTATACGAATTTTTATACCTACCA
CTATTAATTTGTACCGAGTTAGCAATTAGCAACCCTATACCGTTGTCAAAAATACTAGCA
GATTAAATCTACATTGCTTTTGGTGTCAGATTATGCCTCTGTGCATCTAAAAATATTTAA
TACTCATGTGTTCTCACAGAAAAAAAATGTACCTTTCTCATTAGAATACTAAAATGCTTT
AGTGCATATTATGATTTGTTATTAGCGTGAATTTTGATGTAGAGGAGAATGCAGTGTGCT
AAGTAATATGCCAGTGTTTTGCTACATTCATTTGTAGAAAAAATCATCCTTGAAAATATG
AATGCATGAAAACCTATTTTGTAAAATAAACTGCTCATGGGGAAGGGGAGTTTGCCTTTA
ATAATGTTTCACTACTTACCATAGAATCTCTACTTAAAAATTGCATTCCCAAGACTCTCA
TGTAGTTTTTGTACCTTACTTCCTGGTATATCAAGGGAGATATACCTCTAGAGAGAGAGA
GAGAGAAATAATTTGGTGAGCATGTCTTACTTCCCTGACTCAGTAGGGCATTAAGCTTGG
TTGAAATTGCTGCAGACAATGTTTTGCATTACTTTATTAATAGACTGGGATAGGGTTAAG
GGGTTGTGCTGGAAAAATGTAAAAAAGCCAGAAGTGAGAAATATGTATTTCACTCTAAAG
GAAAATTCTTTAAAAATAAATTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1050-1168, + strand, RNAz p=0.575423

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1050-1168, + strand, RNAz p=0.575423

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK057694, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK057694, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1344, gnl|bosTau2|chr7 (58543081-58541735)
               

               
               1-1344, gnl|Hg17|chr5 (94068851-94067511)
               

               
               1-1344, gnl|Mm7|chr13 (74043720-74044991)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1344, gnl|bosTau2|chr7 (58543081-58541735)
               

               
               1-1344, gnl|Hg17|chr5 (94068851-94067511)
               

               
               1-1344, gnl|Mm7|chr13 (74043720-74044991)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.344392)
               

               
               tra (0.246184)
               

               
               liv (0.146284)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               tra (0.246184)
               

               
               liv (0.146284)

	1-1344, gnl\|bosTau2\|chr7 (58543081-58541735)
	1-1344, gnl\|Hg17\|chr5 (94068851-94067511)
	1-1344, gnl\|Mm7\|chr13 (74043720-74044991)