Non-Coding RNA Search

Ss1.1-Mixn-0021p09.5

Sequence:


               
               TTGTTTTACCTGTAGCCAGGGATGACTAAGAGATTTGTCCACACTGTAACGTTTTCTCAT
CTTCACTTGAAGTAGATTATTTATCAAGTCAATTGCTAAGGGAAAAGACAAAATCAGTAG
GTTATTTATCAAGTCAATTGCTAAGGGAAAGGACAAAATCAGATATATGGATTTGAGGGT
GCAGAGCATCCAAAAAGTGACTCTGCTTGGAAGGCAGCTCAATCCATAGGAATATAGGAT
TCAGGATTTTTTTGCTTCTCAAGTACATGGCCTTTAAGCTAACATGTTAGTGACCCATAA
ATGTTTATTAAATTTATAGTGTAACTGATTTATTAAGGAGGCAGTATAGAGTACAGACTA
AAAGTACAGACTGGAGCCAGCATGCCTGAGTTGAAGTCGTTCTTGCCATTTGTGTGTGTG
ACATGTGTGTGACATAGGGTCACTTTCTAAGCTATACTGTGCCTCAGTTTCCTCATCTGT
AAAACAAGGTTGTCAAGAAGATGAAATGGCTTAGAATGGTGCTTAGCACATAAGTGCTAA
ATATTAACTATTATTTTAAAAAATTAATTAAAACAGACTCTGATTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTTACCTGTAGCCAGGGATGACTAAGAGATTTGTCCACACTGTAACGTTTTCTCAT
CTTCACTTGAAGTAGATTATTTATCAAGTCAATTGCTAAGGGAAAAGACAAAATCAGTAG
GTTATTTATCAAGTCAATTGCTAAGGGAAAGGACAAAATCAGATATATGGATTTGAGGGT
GCAGAGCATCCAAAAAGTGACTCTGCTTGGAAGGCAGCTCAATCCATAGGAATATAGGAT
TCAGGATTTTTTTGCTTCTCAAGTACATGGCCTTTAAGCTAACATGTTAGTGACCCATAA
ATGTTTATTAAATTTATAGTGTAACTGATTTATTAAGGAGGCAGTATAGAGTACAGACTA
AAAGTACAGACTGGAGCCAGCATGCCTGAGTTGAAGTCGTTCTTGCCATTTGTGTGTGTG
ACATGTGTGTGACATAGGGTCACTTTCTAAGCTATACTGTGCCTCAGTTTCCTCATCTGT
AAAACAAGGTTGTCAAGAAGATGAAATGGCTTAGAATGGTGCTTAGCACATAAGTGCTAA
ATATTAACTATTATTTTAAAAAATTAATTAAAACAGACTCTGATTACA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               116-588, gnl|bosTau2|chr11 (18842903-18843361)
               

               
               116-588, gnl|Hg17|chr2 (37393059-37393521)
               

               
               116-588, gnl|Mm7|chr17 (77253292-77253734)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-588, gnl|bosTau2|chr11 (18842903-18843361)
               

               
               116-588, gnl|Hg17|chr2 (37393059-37393521)
               

               
               116-588, gnl|Mm7|chr17 (77253292-77253734)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               lun (0.300978)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	116-588, gnl\|bosTau2\|chr11 (18842903-18843361)
	116-588, gnl\|Hg17\|chr2 (37393059-37393521)
	116-588, gnl\|Mm7\|chr17 (77253292-77253734)

	lun (0.300978)
	fco (0.157208)
	ova (0.129132)
	pgl (0.118483)
	ecc (0.115035)
	ldo (0.0970026)