Non-Coding RNA Search

Ss1.1-Mixn-0021p18.5

Sequence:


               
               TATCTCTGCTGCTACTACATTAGCTTTGAGCCATACTCTCTTCTCTGAATTGCAGAGGCC
CTTTTGTAAGAAGTGTCCTTACTTCCCGTCCTTCCTTAAAGCCATCCAGCAGGGCATTCT
CTGGTGGCCTAATGGTTAAGGATCTGATGTGGTCACTCCTGCGGCTGTGCTCCCGGTTGT
GGCTCGGGTGTGATCCCTGGTGCAGGAGCTACTGCATGCTATGGTCATGACCCCCCAAAA
TCCATCTACCAGACTAAGATCCAATTCCCATGAGGTCATTTAATTAATTAAGACCTTTTG
AAGACGATTGGATAGAGTTCAGGCTTTTTATCACGACTCACAAACCTAATCCTTTCCTTG
CTGTTTGTTCCTGGGTAACAAATTTATTCTTCCCCGCTCTCCCCATACACACATTCACTT
TTGCTCAAGGTCGTCCGTACCATTTTAACACTGCCCTGGTCCCCTCTGCCTGCTTGATTC
CACACTTCTTTCAAGACTCAGCTCGGAAGTCCCCTTCTCTTATGAAACTGTTGGCTCCCT
GAAGCTAGTTGATTTTGGTATGGCAAAAAAATCCCAGATTTTTAACACCAAACCTGTTTG
ATTCTTGGTTCTGCTACAGACTAGGAAAGAGCCTTGGGCAAGTAAATTCATCTCTTTGAG
CCTTTTCCCTCATCTGTTAAGTGAGGATATTGATACCTACCTTTCATAGTATTCAGGGAA
TCAGAAAATAGAATAAAGTTGATAGAAGGCCCTGGACACAAAGAAGTAGGCAGCAGCTGG
TAGTTCCCATCCCTGGCCCCGCGTGCCGTGTCTGCCTCCAGTATTGGAAACACCCCATCG
TGCCGAAATTGCCAGTTTACCTGTTTGCCTCCCTTTCCAAGACCACTGGTGCCTAGAAGA
CTAGAATCTTGTCTTACTTAACTCTGTATAAGCAGGCCCTAGCTCAGGACTGGCAAATAG
GAATTAAATAAATTTGCTGCCTTGGAAACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCTCTGCTGCTACTACATTAGCTTTGAGCCATACTCTCTTCTCTGAATTGCAGAGGCC
CTTTTGTAAGAAGTGTCCTTACTTCCCGTCCTTCCTTAAAGCCATCCAGCAGGGCATTCT
CTGGTGGCCTAATGGTTAAGGATCTGATGTGGTCACTCCTGCGGCTGTGCTCCCGGTTGT
GGCTCGGGTGTGATCCCTGGTGCAGGAGCTACTGCATGCTATGGTCATGACCCCCCAAAA
TCCATCTACCAGACTAAGATCCAATTCCCATGAGGTCATTTAATTAATTAAGACCTTTTG
AAGACGATTGGATAGAGTTCAGGCTTTTTATCACGACTCACAAACCTAATCCTTTCCTTG
CTGTTTGTTCCTGGGTAACAAATTTATTCTTCCCCGCTCTCCCCATACACACATTCACTT
TTGCTCAAGGTCGTCCGTACCATTTTAACACTGCCCTGGTCCCCTCTGCCTGCTTGATTC
CACACTTCTTTCAAGACTCAGCTCGGAAGTCCCCTTCTCTTATGAAACTGTTGGCTCCCT
GAAGCTAGTTGATTTTGGTATGGCAAAAAAATCCCAGATTTTTAACACCAAACCTGTTTG
ATTCTTGGTTCTGCTACAGACTAGGAAAGAGCCTTGGGCAAGTAAATTCATCTCTTTGAG
CCTTTTCCCTCATCTGTTAAGTGAGGATATTGATACCTACCTTTCATAGTATTCAGGGAA
TCAGAAAATAGAATAAAGTTGATAGAAGGCCCTGGACACAAAGAAGTAGGCAGCAGCTGG
TAGTTCCCATCCCTGGCCCCGCGTGCCGTGTCTGCCTCCAGTATTGGAAACACCCCATCG
TGCCGAAATTGCCAGTTTACCTGTTTGCCTCCCTTTCCAAGACCACTGGTGCCTAGAAGA
CTAGAATCTTGTCTTACTTAACTCTGTATAAGCAGGCCCTAGCTCAGGACTGGCAAATAG
GAATTAAATAAATTTGCTGCCTTGGAAACAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               848-965, - strand, RNAz p=0.671414
               

               
               849-965, - strand, RNAz p=0.787416

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               848-965, - strand, RNAz p=0.671414
               

               
               849-965, - strand, RNAz p=0.787416

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               233-583, gnl|bosTau2|chr15 (32782664-32782307)
               

               
               233-583, gnl|Hg17|chr11 (6591315-6590957)
               


               
               597-965, gnl|bosTau2|chr15 (32782316-32781949)
               

               
               597-965, gnl|canFam2|chr21 (33107225-33107499)
               

               
               597-965, gnl|dasNov1|scaffold_22726 (17344-17088)
               

               
               597-965, gnl|echTel1|scaffold_308473 (29923-29656)
               

               
               597-965, gnl|hg17|chr11 (6590597-6590878)
               

               
               597-965, gnl|Hg17|chr11 (6590989-6590596)
               

               
               597-965, gnl|loxAfr1|scaffold_171897 (464-184)
               

               
               597-965, gnl|mm7|chr7 (101801258-101801496)
               

               
               597-965, gnl|panTro1|chr9 (6734010-6734292)
               

               
               597-965, gnl|rheMac2|chr14 (65590280-65590002)
               

               
               597-965, gnl|rn3|chr1 (163584743-163584981)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               233-583, gnl|bosTau2|chr15 (32782664-32782307)
               

               
               233-583, gnl|Hg17|chr11 (6591315-6590957)
               


               
               597-965, gnl|bosTau2|chr15 (32782316-32781949)
               

               
               597-965, gnl|canFam2|chr21 (33107225-33107499)
               

               
               597-965, gnl|dasNov1|scaffold_22726 (17344-17088)
               

               
               597-965, gnl|echTel1|scaffold_308473 (29923-29656)
               

               
               597-965, gnl|hg17|chr11 (6590597-6590878)
               

               
               597-965, gnl|Hg17|chr11 (6590989-6590596)
               

               
               597-965, gnl|loxAfr1|scaffold_171897 (464-184)
               

               
               597-965, gnl|mm7|chr7 (101801258-101801496)
               

               
               597-965, gnl|panTro1|chr9 (6734010-6734292)
               

               
               597-965, gnl|rheMac2|chr14 (65590280-65590002)
               

               
               597-965, gnl|rn3|chr1 (163584743-163584981)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               cov (0.264306)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cov (0.264306)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	848-965, - strand, RNAz p=0.671414
	849-965, - strand, RNAz p=0.787416

	233-583, gnl\|bosTau2\|chr15 (32782664-32782307)
	233-583, gnl\|Hg17\|chr11 (6591315-6590957)

	597-965, gnl\|bosTau2\|chr15 (32782316-32781949)
	597-965, gnl\|canFam2\|chr21 (33107225-33107499)
	597-965, gnl\|dasNov1\|scaffold_22726 (17344-17088)
	597-965, gnl\|echTel1\|scaffold_308473 (29923-29656)
	597-965, gnl\|hg17\|chr11 (6590597-6590878)
	597-965, gnl\|Hg17\|chr11 (6590989-6590596)
	597-965, gnl\|loxAfr1\|scaffold_171897 (464-184)
	597-965, gnl\|mm7\|chr7 (101801258-101801496)
	597-965, gnl\|panTro1\|chr9 (6734010-6734292)
	597-965, gnl\|rheMac2\|chr14 (65590280-65590002)
	597-965, gnl\|rn3\|chr1 (163584743-163584981)

	amn (0.417711)
	cov (0.264306)
	sin (0.174948)
	cki (0.165235)
	cli (0.152812)
	cag (0.151194)
	ute (0.132784)
	ova (0.129132)
	jca (0.11396)
	ldo (0.0970026)