Non-Coding RNA Search

Ss1.1-Mixn-0021p24.5

Sequence:


               
               CGCTGTCACGTGGAACCTCTTAGCCTCAGCATCTGGAGTCCTGGAGGGGAGCGGATAGAT
TTAAACAATTACCGCAGTCTTTGAAGAAACCTTCAGCCTTCAAGAACCAGCCACCTCAAG
ATCTCAACATCATGATCTCAGTTTCAACCCAGTTGTTCTTAATTCTCTTTTCATTGCTTT
TGGTGCTGCCTGTTGTTGAAGCAGTAGAAGCTGGAGATGCAATCGCTCTCTTGTTAGGTG
TGGTTCTCAGCATTACAGGCATTTGTGCTTGTTTGGGGGTATATGCACGAAAGAGAAATG
GACAGATGTGACTTGGAAGGATTTCCTGAACCAAACCTTGCCCTGAAAACCTGTGTGCTA
TTTGAGGTTCAAAACTGAGCTTTGGTGTCTGAAAGTTACAGTTAAATAGAGTAGTTTCAT
ATTCTTGGTTATTTCCCTATGAATGGGAACAAATTGATATACTAATGGTCAAATGGAAAA
CAAAATGTTTTCTTCACAGCAAATAATGCATTGAAAAATGCCGTCTGTAATTTGTATTTG
CTAGTTAGAAAGAGGGCCAAAAATGAAATGATTGAAATTTGCATTAAGTGCTATTTCATA
GTTTCAGAATTCTCAATAGGAAGAAGGAAACACTTGCCCAGAATCCCTGGTAGTTGCCAC
TGTTAAGTTATAATCACTGCCTCCTACATCGTTGAGGAGTCTTTTCTCTATATTTTTACT
GGATTTTTTTGTTGTTGTTGTTGTTATCTCCCAAGTGAATGTTATACTTACGTATTAAAT
ACAATTGGTCAAATATTAAAACATTTCTTAGCAGGGAGTGAAAAGTGTAGAAATTGTATT
CAGTGTATCTAACATTGAATTAAAGGAAAGATATAAAGATATGTAAAAAAAGTACTTTAT
ATTGACATTGAAATGGAGAAGAGATTTAATGTTAAAAAATCTTTATATTAACTGACACTC
TATTGCGAGAAGTACTATATTAAATATAAACCCATTAATATAAACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGTCACGTGGAACCTCTTAGCCTCAGCATCTGGAGTCCTGGAGGGGAGCGGATAGAT
TTAAACAATTACCGCAGTCTTTGAAGAAACCTTCAGCCTTCAAGAACCAGCCACCTCAAG
ATCTCAACATCATGATCTCAGTTTCAACCCAGTTGTTCTTAATTCTCTTTTCATTGCTTT
TGGTGCTGCCTGTTGTTGAAGCAGTAGAAGCTGGAGATGCAATCGCTCTCTTGTTAGGTG
TGGTTCTCAGCATTACAGGCATTTGTGCTTGTTTGGGGGTATATGCACGAAAGAGAAATG
GACAGATGTGACTTGGAAGGATTTCCTGAACCAAACCTTGCCCTGAAAACCTGTGTGCTA
TTTGAGGTTCAAAACTGAGCTTTGGTGTCTGAAAGTTACAGTTAAATAGAGTAGTTTCAT
ATTCTTGGTTATTTCCCTATGAATGGGAACAAATTGATATACTAATGGTCAAATGGAAAA
CAAAATGTTTTCTTCACAGCAAATAATGCATTGAAAAATGCCGTCTGTAATTTGTATTTG
CTAGTTAGAAAGAGGGCCAAAAATGAAATGATTGAAATTTGCATTAAGTGCTATTTCATA
GTTTCAGAATTCTCAATAGGAAGAAGGAAACACTTGCCCAGAATCCCTGGTAGTTGCCAC
TGTTAAGTTATAATCACTGCCTCCTACATCGTTGAGGAGTCTTTTCTCTATATTTTTACT
GGATTTTTTTGTTGTTGTTGTTGTTATCTCCCAAGTGAATGTTATACTTACGTATTAAAT
ACAATTGGTCAAATATTAAAACATTTCTTAGCAGGGAGTGAAAAGTGTAGAAATTGTATT
CAGTGTATCTAACATTGAATTAAAGGAAAGATATAAAGATATGTAAAAAAAGTACTTTAT
ATTGACATTGAAATGGAGAAGAGATTTAATGTTAAAAAATCTTTATATTAACTGACACTC
TATTGCGAGAAGTACTATATTAAATATAAACCCATTAATATAAACCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               787-892, + strand, RNAz p=0.998869

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               787-892, + strand, RNAz p=0.998869

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               3-337, gnl|bosTau2|chr10 (5931527-5931193)
               

               
               3-337, gnl|Hg17|chrX (69804341-69804003)
               

               
               3-337, gnl|Mm7|chr6 (13812179-13811542)
               


               
               442-939, gnl|bosTau2|chr25 (3590682-3590186)
               

               
               442-939, gnl|Hg17|chr6 (87835216-87834765)
               


               
               447-876, gnl|bosTau2|chr10 (5930361-5929948)
               

               
               447-876, gnl|Hg17|chrX (69803887-69803309)
               

               
               447-876, gnl|Mm7|chr6 (13811344-13810915)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-337, gnl|bosTau2|chr10 (5931527-5931193)
               

               
               3-337, gnl|Hg17|chrX (69804341-69804003)
               

               
               3-337, gnl|Mm7|chr6 (13812179-13811542)
               


               
               442-939, gnl|bosTau2|chr25 (3590682-3590186)
               

               
               442-939, gnl|Hg17|chr6 (87835216-87834765)
               


               
               447-876, gnl|bosTau2|chr10 (5930361-5929948)
               

               
               447-876, gnl|Hg17|chrX (69803887-69803309)
               

               
               447-876, gnl|Mm7|chr6 (13811344-13810915)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

Help | Less info


               
               bfe (0.749288)
               

               
               mga (0.64082)
               

               
               tbr (0.616713)
               

               
               isp (0.601504)
               

               
               rec (0.519211)
               

               
               fat (0.442282)
               

               
               cmu (0.372787)
               

               
               ctl (0.306138)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.749288)
               

               
               mga (0.64082)
               

               
               tbr (0.616713)
               

               
               isp (0.601504)
               

               
               rec (0.519211)
               

               
               fat (0.442282)
               

               
               cmu (0.372787)
               

               
               ctl (0.306138)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

	3-337, gnl\|bosTau2\|chr10 (5931527-5931193)
	3-337, gnl\|Hg17\|chrX (69804341-69804003)
	3-337, gnl\|Mm7\|chr6 (13812179-13811542)

	442-939, gnl\|bosTau2\|chr25 (3590682-3590186)
	442-939, gnl\|Hg17\|chr6 (87835216-87834765)

	447-876, gnl\|bosTau2\|chr10 (5930361-5929948)
	447-876, gnl\|Hg17\|chrX (69803887-69803309)
	447-876, gnl\|Mm7\|chr6 (13811344-13810915)

	bfe (0.749288)
	mga (0.64082)
	tbr (0.616713)
	isp (0.601504)
	rec (0.519211)
	fat (0.442282)
	cmu (0.372787)
	ctl (0.306138)
	sme (0.305437)
	lin (0.291206)
	ldo (0.291008)
	ssp (0.271039)
	ste (0.270416)
	pla (0.267344)
	sug (0.254582)
	pan (0.23596)
	mas (0.210305)
	tes (0.207814)
	nlu (0.191681)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	fco (0.157208)
	lun (0.150489)
	spl (0.143184)
	hlv (0.139256)
	nmm (0.132802)
	ova (0.129132)
	pgl (0.118483)