Ss1.1-Mixn-0022a10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTCACTTTTAATAACATTTTCTTATTAAAAAAAATACAGCAACAAGCTCTCCATCT GTCCGTCCATCTCGCCTGGCCTTCCTGGGGCTGAGGCCGGAAAGGGAACTAGGTGGCTGG CGGTGGCGGGGCCCCGGGGTGGACTAGGTGCTGTTGGCCTGCTCCTGCTCAAACAGAGCC ATGGCGAGCTGGGCGCGCCCCCCCAGCCCCTCCAGGTTGCTGAGGCGGCAGCGGTGGTAG AGTTCCTCGCTGAGCCGAGGGCTGCAGTCACGCAGGGAGAACTTCTGCACCAGCCCTGGC TCCACGGCCCGGAAAAGGTGGAGCCCTGAGAACCGGAGGAAAACATCCATCACCTCCAGC CCCTCCAGGGCTTCCTCCTCTTCCTGGCCTGCCAGTTCACCAGCCAGCCGGGCTCGGGCC GCCAGGTAGTCAGCATTGTAGAAGCAGCCCTCTGCCGAGGCCTGTCGGTCAAACCTGCCC CCTACGGGAGCCCCCCGTGAAGGGTCAGCGCCCGGAGGGGACGGGGGGTCAGGGCCAGCG CCCGGGGGCCCGGGGGGAGATCTCTGTGGTGCCAGGGCGGGGTTGAACTCCTGGAAGTGG ACCGGGAAGAAGGCCTGCCAGCCAGAGATGGCATTCATGCGGCAGCGGTTGAGGACCTCG GGCCCGGGCCTGGTCCACACGGTGGTGAGGAAGAAGAGCGTGTCCACGGGGTGCTTCTTG GAGACCACGTCCATGAGCCGCACCTGGGAGGGGGCCTCCGCCCGCACGGCGAGCCAGGCC AGCCTCGTCCCGGGGTACCGTCGTTCTAACTCAGCCGCCGCAGCCTTCACCCCAAGAAAC GGGTCCGGGGCCCCTCGGCCACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTCACTTTTAATAACATTTTCTTATTAAAAAAAATACAGCAACAAGCTCTCCATCT GTCCGTCCATCTCGCCTGGCCTTCCTGGGGCTGAGGCCGGAAAGGGAACTAGGTGGCTGG CGGTGGCGGGGCCCCGGGGTGGACTAGGTGCTGTTGGCCTGCTCCTGCTCAAACAGAGCC ATGGCGAGCTGGGCGCGCCCCCCCAGCCCCTCCAGGTTGCTGAGGCGGCAGCGGTGGTAG AGTTCCTCGCTGAGCCGAGGGCTGCAGTCACGCAGGGAGAACTTCTGCACCAGCCCTGGC TCCACGGCCCGGAAAAGGTGGAGCCCTGAGAACCGGAGGAAAACATCCATCACCTCCAGC CCCTCCAGGGCTTCCTCCTCTTCCTGGCCTGCCAGTTCACCAGCCAGCCGGGCTCGGGCC GCCAGGTAGTCAGCATTGTAGAAGCAGCCCTCTGCCGAGGCCTGTCGGTCAAACCTGCCC CCTACGGGAGCCCCCCGTGAAGGGTCAGCGCCCGGAGGGGACGGGGGGTCAGGGCCAGCG CCCGGGGGCCCGGGGGGAGATCTCTGTGGTGCCAGGGCGGGGTTGAACTCCTGGAAGTGG ACCGGGAAGAAGGCCTGCCAGCCAGAGATGGCATTCATGCGGCAGCGGTTGAGGACCTCG GGCCCGGGCCTGGTCCACACGGTGGTGAGGAAGAAGAGCGTGTCCACGGGGTGCTTCTTG GAGACCACGTCCATGAGCCGCACCTGGGAGGGGGCCTCCGCCCGCACGGCGAGCCAGGCC AGCCTCGTCCCGGGGTACCGTCGTTCTAACTCAGCCGCCGCAGCCTTCACCCCAAGAAAC GGGTCCGGGGCCCCTCGGCCACCT |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 240-439, - strand, RNAz p=0.939391 | |
| 520-679, + strand, RNAz p=0.737263 | |
| 663-760, - strand, RNAz p=0.986326 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 240-439, - strand, RNAz p=0.939391 | |
| 520-679, + strand, RNAz p=0.737263 | |
| 663-760, - strand, RNAz p=0.986326 |
| Predicted microRNA(s): 2 entry(ies) | More info |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
| 288-410, - strand, RNAmicro p=0.99994 | |
| 291-413, + strand, RNAmicro p=0.999899 |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 288-410, - strand, RNAmicro p=0.99994 | |
| 291-413, + strand, RNAmicro p=0.999899 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 240-439, DB323018 NT2NE2 Homo sapiens cDNA clone NT2NE2006527 3', mRNA (dbj|DB323018.1|), blast E-value=0, identity=95.5% | |
| 240-439, DB323915 NT2RI2 Homo sapiens cDNA clone NT2RI2007956 3', mRNA (dbj|DB323915.1|), blast E-value=0, identity=95.5% | |
| 240-431, 114352 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW670358.1|), blast E-value=0, identity=96.35% | |
| 240-431, 520164 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM256751.1|), blast E-value=0, identity=96.35% | |
| 244-439, GL-Cf-2825 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb|DN746033.1|), blast E-value=0, identity=96.94% | |
| 240-439, sh2P0040H05_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, (gb|DY501331.1|), blast E-value=0, identity=95.5% | |
| 667-758, CT001568 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017G249 5', (emb|CT001568.1|), blast E-value=7e-27, identity=92.39% | |
| 667-760, 967124 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK775983.1|), blast E-value=1e-37, identity=96.81% | |
| 667-760, BovGen_17161 normal cattle brain Bos taurus cDNA clone (gb|CO888836.1|), blast E-value=1e-37, identity=96.81% | |
| 663-760, UMC-pd12_14end-009-a12 Endometrium pregnant gilt day 12 & 14 (gb|CO994903.1|), blast E-value=0, identity=100% | |
| 667-758, CT02037B2E10 Equine Articular Cartilage cDNA Library Equus caballus (gb|CX604274.1|), blast E-value=1e-31, identity=94.57% | |
| 667-760, 000829BEMN008711HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY121261.1|), blast E-value=1e-37, identity=96.81% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 240-439, DB323018 NT2NE2 Homo sapiens cDNA clone NT2NE2006527 3', mRNA (dbj|DB323018.1|), blast E-value=0, identity=95.5% | |
| 240-439, DB323915 NT2RI2 Homo sapiens cDNA clone NT2RI2007956 3', mRNA (dbj|DB323915.1|), blast E-value=0, identity=95.5% | |
| 240-431, 114352 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW670358.1|), blast E-value=0, identity=96.35% | |
| 240-431, 520164 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM256751.1|), blast E-value=0, identity=96.35% | |
| 244-439, GL-Cf-2825 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb|DN746033.1|), blast E-value=0, identity=96.94% | |
| 240-439, sh2P0040H05_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA, (gb|DY501331.1|), blast E-value=0, identity=95.5% | |
| 667-758, CT001568 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017G249 5', (emb|CT001568.1|), blast E-value=7e-27, identity=92.39% | |
| 667-760, 967124 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK775983.1|), blast E-value=1e-37, identity=96.81% | |
| 667-760, BovGen_17161 normal cattle brain Bos taurus cDNA clone (gb|CO888836.1|), blast E-value=1e-37, identity=96.81% | |
| 663-760, UMC-pd12_14end-009-a12 Endometrium pregnant gilt day 12 & 14 (gb|CO994903.1|), blast E-value=0, identity=100% | |
| 667-758, CT02037B2E10 Equine Articular Cartilage cDNA Library Equus caballus (gb|CX604274.1|), blast E-value=1e-31, identity=94.57% | |
| 667-760, 000829BEMN008711HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY121261.1|), blast E-value=1e-37, identity=96.81% |
| Aligned organism(s): 19 entry(ies) | More info |
| Aligned organism(s): 19 entry(ies) | Help | Less info |
| 7-864, gnl|bosTau2|chr4 (64357979-64358818) | |
| 7-864, gnl|canFam2|chr16 (18226271-18227270) | |
| 7-864, gnl|danRer3|chr7 (36085323-36084360) | |
| 7-864, gnl|dasNov1|scaffold_55366 (4356-5356) | |
| 7-864, gnl|echTel1|scaffold_267036 (4730-5729) | |
| 7-864, gnl|fr1|chrUn (3410871-3409905) | |
| 7-864, gnl|galGal2|chrUn (125735222-125736167) | |
| 7-864, gnl|hg17|chr7 (150372424-150373423) | |
| 7-864, gnl|Hg17|chr7 (150373544-150372695) | |
| 7-864, gnl|loxAfr1|scaffold_19096 (25745-26744) | |
| 7-864, gnl|mm7|chr5 (23631878-23632860) | |
| 7-864, gnl|Mm7|chr5 (23632968-23632149) | |
| 7-864, gnl|monDom2|scaffold_7 (11453503-11454502) | |
| 7-864, gnl|oryCun1|scaffold_208276 (104479-105471) | |
| 7-864, gnl|panTro1|chr6_random (16552311-16551310) | |
| 7-864, gnl|rheMac2|chr3 (188186988-188187987) | |
| 7-864, gnl|rn3|chr4 (5961034-5960046) | |
| 7-864, gnl|tetNig1|chr6 (4859838-4858879) | |
| 7-864, gnl|xenTro1|scaffold_1115 (177183-178132) |
| Aligned organism(s): 19 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-864, gnl|bosTau2|chr4 (64357979-64358818) | |
| 7-864, gnl|canFam2|chr16 (18226271-18227270) | |
| 7-864, gnl|danRer3|chr7 (36085323-36084360) | |
| 7-864, gnl|dasNov1|scaffold_55366 (4356-5356) | |
| 7-864, gnl|echTel1|scaffold_267036 (4730-5729) | |
| 7-864, gnl|fr1|chrUn (3410871-3409905) | |
| 7-864, gnl|galGal2|chrUn (125735222-125736167) | |
| 7-864, gnl|hg17|chr7 (150372424-150373423) | |
| 7-864, gnl|Hg17|chr7 (150373544-150372695) | |
| 7-864, gnl|loxAfr1|scaffold_19096 (25745-26744) | |
| 7-864, gnl|mm7|chr5 (23631878-23632860) | |
| 7-864, gnl|Mm7|chr5 (23632968-23632149) | |
| 7-864, gnl|monDom2|scaffold_7 (11453503-11454502) | |
| 7-864, gnl|oryCun1|scaffold_208276 (104479-105471) | |
| 7-864, gnl|panTro1|chr6_random (16552311-16551310) | |
| 7-864, gnl|rheMac2|chr3 (188186988-188187987) | |
| 7-864, gnl|rn3|chr4 (5961034-5960046) | |
| 7-864, gnl|tetNig1|chr6 (4859838-4858879) | |
| 7-864, gnl|xenTro1|scaffold_1115 (177183-178132) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| eje (0.0988338) |