Non-Coding RNA Search

Ss1.1-Mixn-0022b09.5

Sequence:


               
               TGAGCTGTAGCACACATCTTGTGCTTAGTTTGTTTTCATCCATCTCCCTCTGGCTTCCTA
GAGTTTGGACATATTCCAGGGCTCAATGCTTTTACTCAAACCGCAGAAAAAGGTTTCCTT
GAAGTAATGTGTGCATGTTGTGCATGTATGTGGGTGGCTTGGGGAGAAGGCAGAGCGAGG
ATTTCATCCTTAGCCCCAAGCTGCCATTTCTGAGGCTCCAAGAGGGTCGCTGCAGGGCCA
GAGCTCATATTTGGCCTTTTTTTGTAGCTCTTACAAGAAGGGAGGGACAGGGATCTGCAG
ACTGCTCACGGGACCAGTAACCAAGGGGTTACCGGTAGCAAGTGAGGGCACGAGTTTAGT
TCTGGACCCTGTGTCTTACTGTGTGACTTTAAATGGCAGTGTTGGGTGCGTTCCCAAAAT
CCACACATCCCCACTTTGCTGGAGGAAAACCTCAACTTCGCTAAGTTGAACTGTTTTTCT
TGGTGTGGCGTAGATGTTCCCTTCCAGAACCCCTTCTAATAATCGTCCTTCAGGAGCACC
AGCCACTCCTCAAGTGGGTGGGAAATCAGAGAACTGTGCCCAAGAGGGTACACAGCAGTC
ATGAAGATGAGGCATCTTGGCTGGAAGAGCAGGGAAACGCCTCGGTATTCAGGCAAACTT
TCCGAAAAAATACAGCTATCACATAGAAAAAGCTCGCCTAGAGTGTAAACTGGATTGAGA
AGCGCTCTCAAGTGATTCTGTAATTTTGTTTTATGCTGAAGTAATGTACCCTCGAGCATT
CTGGTGTTTTTATATTTATGTAATAATTTCTTAAAAAACATTGGAGACAGATAACTATTT
AATTTTTTGAAGACAGTTGGAAGTCTCTCCTCCCTCCCAAGGACAGTGGCTGGGAAGAGC
TGGGGCACAGCCAGTTCTGAACGCTGGTGGCGGGGACAGTGGCTCGGCCTCTGGAACCAC
CAACCCAGGCCGGCTTACTGTGCGGCAGCGTGTGAACACAGGCAGCTCTGGGTCAAATAC
AGGTGCTCCCGCAGGGGTCCTCTGAACCAAGCCCCTGTCCCTTCCTAGGGGTGAGAACTG
TACCCAGGGACGGAGCCACCTTTCTCCAAGAACCTCCACTTACTCACTGCTGCTGTTGCC
ACGAGGCTGTTCTGTGCGGGACTCCTGGCTGGGTGTGCGTTTGGGTGGGGAAGGAGCGTG
GAGGATGCTGATGGCCTGCCCTTCTCAGCCAGCCTGACCTTTTAATACCTTTGTAAAAAG
CATGTATGTATTTATAGTGTTTTAGACTTTTCTAACTTTTTGTATCTTAAGAGCAGAGCA
CCTGTTTAAGCATTGTACCCATTGTTAAAGAACTGTGTCCTCTCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCTGTAGCACACATCTTGTGCTTAGTTTGTTTTCATCCATCTCCCTCTGGCTTCCTA
GAGTTTGGACATATTCCAGGGCTCAATGCTTTTACTCAAACCGCAGAAAAAGGTTTCCTT
GAAGTAATGTGTGCATGTTGTGCATGTATGTGGGTGGCTTGGGGAGAAGGCAGAGCGAGG
ATTTCATCCTTAGCCCCAAGCTGCCATTTCTGAGGCTCCAAGAGGGTCGCTGCAGGGCCA
GAGCTCATATTTGGCCTTTTTTTGTAGCTCTTACAAGAAGGGAGGGACAGGGATCTGCAG
ACTGCTCACGGGACCAGTAACCAAGGGGTTACCGGTAGCAAGTGAGGGCACGAGTTTAGT
TCTGGACCCTGTGTCTTACTGTGTGACTTTAAATGGCAGTGTTGGGTGCGTTCCCAAAAT
CCACACATCCCCACTTTGCTGGAGGAAAACCTCAACTTCGCTAAGTTGAACTGTTTTTCT
TGGTGTGGCGTAGATGTTCCCTTCCAGAACCCCTTCTAATAATCGTCCTTCAGGAGCACC
AGCCACTCCTCAAGTGGGTGGGAAATCAGAGAACTGTGCCCAAGAGGGTACACAGCAGTC
ATGAAGATGAGGCATCTTGGCTGGAAGAGCAGGGAAACGCCTCGGTATTCAGGCAAACTT
TCCGAAAAAATACAGCTATCACATAGAAAAAGCTCGCCTAGAGTGTAAACTGGATTGAGA
AGCGCTCTCAAGTGATTCTGTAATTTTGTTTTATGCTGAAGTAATGTACCCTCGAGCATT
CTGGTGTTTTTATATTTATGTAATAATTTCTTAAAAAACATTGGAGACAGATAACTATTT
AATTTTTTGAAGACAGTTGGAAGTCTCTCCTCCCTCCCAAGGACAGTGGCTGGGAAGAGC
TGGGGCACAGCCAGTTCTGAACGCTGGTGGCGGGGACAGTGGCTCGGCCTCTGGAACCAC
CAACCCAGGCCGGCTTACTGTGCGGCAGCGTGTGAACACAGGCAGCTCTGGGTCAAATAC
AGGTGCTCCCGCAGGGGTCCTCTGAACCAAGCCCCTGTCCCTTCCTAGGGGTGAGAACTG
TACCCAGGGACGGAGCCACCTTTCTCCAAGAACCTCCACTTACTCACTGCTGCTGTTGCC
ACGAGGCTGTTCTGTGCGGGACTCCTGGCTGGGTGTGCGTTTGGGTGGGGAAGGAGCGTG
GAGGATGCTGATGGCCTGCCCTTCTCAGCCAGCCTGACCTTTTAATACCTTTGTAAAAAG
CATGTATGTATTTATAGTGTTTTAGACTTTTCTAACTTTTTGTATCTTAAGAGCAGAGCA
CCTGTTTAAGCATTGTACCCATTGTTAAAGAACTGTGTCCTCTCTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               76-275, + strand, RNAz p=0.786352

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-275, + strand, RNAz p=0.786352

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               91-176, + strand, RNAmicro p=0.995036

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               91-176, + strand, RNAmicro p=0.995036

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-894, gnl|bosTau2|chr10 (6317211-6316368)
               

               
               1-894, gnl|Hg17|chr15 (65273147-65274093)
               


               
               931-1368, gnl|bosTau2|chr10 (6316384-6315959)
               

               
               931-1368, gnl|Hg17|chr15 (65274022-65274516)
               

               
               931-1368, gnl|Mm7|chr9 (63675741-63675300)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-894, gnl|bosTau2|chr10 (6317211-6316368)
               

               
               1-894, gnl|Hg17|chr15 (65273147-65274093)
               


               
               931-1368, gnl|bosTau2|chr10 (6316384-6315959)
               

               
               931-1368, gnl|Hg17|chr15 (65274022-65274516)
               

               
               931-1368, gnl|Mm7|chr9 (63675741-63675300)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pty (0.285429)
               

               
               cst (0.280073)
               

               
               pla (0.267344)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               pla (0.267344)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	1-894, gnl\|bosTau2\|chr10 (6317211-6316368)
	1-894, gnl\|Hg17\|chr15 (65273147-65274093)

	931-1368, gnl\|bosTau2\|chr10 (6316384-6315959)
	931-1368, gnl\|Hg17\|chr15 (65274022-65274516)
	931-1368, gnl\|Mm7\|chr9 (63675741-63675300)

	pty (0.285429)
	cst (0.280073)
	pla (0.267344)
	col (0.195008)
	ldo (0.194005)
	ton (0.1755)
	eep (0.122564)
	eru (0.120048)