Non-Coding RNA Search

Ss1.1-Mixn-0022b19.5.5

Sequence:


               
               CTTGGTGGGAGAGAAACAATAGGACGGAAGCGCCGCTGGACCGGGCTGAGGCGGCAGCAG
AGTGTCCTGCCCCACACAACTAAGGAGTTGAGGCCAGACAGAAGCAGGGACAGAGGACAG
ACCGAGGACGCATTGGCCACTGGACCCCGCCACCTCCCCCTTCTCTCTGCCGCCCGCATC
TGGAGGATGAGCCCAGCTTTCAGGGCCATGGACGTGGAGCCCCGTGCCAAGGGCATCCTG
CTGGAGCCCTTTGTCCACCAGGTTGGGGGGCACTCATGCGTGCTCCGCTTCAATGAGACG
ACCCTGTGCAAGCCCCTGGTCCCGAGGGAGCACCAGTTCTACGAGACCCTCCCAGCCGAG
ATGCGCAAATTCACTCCCCAATACAAAGGACAAAGCCAAAGGCCCCTTGTTAGCTGGCCG
CCCCTGTCCCCATTTTTCCCCTGGTTCTTTCCCCATGGCCACAGGAAATTGTGGTCCCCT
TCCTCGGAGCCCTCACCCCTCCCACTCACTCTGTGTGGTACCACCTCAGAAGTGTCGTCT
CTTTGAGCACGCATTCCCCTGCAGCAAGCGAGCGGGCGGGCAGCAAGGACTGAGCAAATT
GAGTGATCCCAGGCCAGAGAGGCCTGGGAAGAAAAGTGTTCAGCCAGTCGCTTGTAAGGC
ACTCGTCGGCACCTGCTGAAACGCTCCCACCTGACAGCCCCCTCCTCAAAGACTGTCTAA
TTACACATGGCAGGTTCTAGAGACTCGGGGAGAGCTGCTTTCAAGGCCGCTGCGCATCTG
TGCTCCCAGCCCAACCCTATTTGCCTTGTGTTCATTTTGTTCTTTTGTTACATGAGACTG
CAAAGACCAATAAAGCAATATATTTGAGAAGGACAAAAGGCTTGGGGGTGCCCACCATGT
GGGGGCACTACAAGAAGCCTTTGCTAGGGTCTCTTTTGTGCTGTGTGGTTTGTTTTGTTT
GCTCCTTTATTTTGTTTTGCTTGCCCAGTCTTCCCTTACCCTTGGATGCTTCTTATTCCT
CAGGCAAATCTGTGTTCAGGCTCTGCTTTAAAGCAAGCCTCAAGGCCGTCGGAGTTTCTG
TTTAGGGCATTAAAAATTCCCACAAGATATAAAGAGCAAATGTTTTTACATCTTTCTCAG
GATTAGAAGAATTACATAAATTAATAAACATTTTCAATGATGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGTGGGAGAGAAACAATAGGACGGAAGCGCCGCTGGACCGGGCTGAGGCGGCAGCAG
AGTGTCCTGCCCCACACAACTAAGGAGTTGAGGCCAGACAGAAGCAGGGACAGAGGACAG
ACCGAGGACGCATTGGCCACTGGACCCCGCCACCTCCCCCTTCTCTCTGCCGCCCGCATC
TGGAGGATGAGCCCAGCTTTCAGGGCCATGGACGTGGAGCCCCGTGCCAAGGGCATCCTG
CTGGAGCCCTTTGTCCACCAGGTTGGGGGGCACTCATGCGTGCTCCGCTTCAATGAGACG
ACCCTGTGCAAGCCCCTGGTCCCGAGGGAGCACCAGTTCTACGAGACCCTCCCAGCCGAG
ATGCGCAAATTCACTCCCCAATACAAAGGACAAAGCCAAAGGCCCCTTGTTAGCTGGCCG
CCCCTGTCCCCATTTTTCCCCTGGTTCTTTCCCCATGGCCACAGGAAATTGTGGTCCCCT
TCCTCGGAGCCCTCACCCCTCCCACTCACTCTGTGTGGTACCACCTCAGAAGTGTCGTCT
CTTTGAGCACGCATTCCCCTGCAGCAAGCGAGCGGGCGGGCAGCAAGGACTGAGCAAATT
GAGTGATCCCAGGCCAGAGAGGCCTGGGAAGAAAAGTGTTCAGCCAGTCGCTTGTAAGGC
ACTCGTCGGCACCTGCTGAAACGCTCCCACCTGACAGCCCCCTCCTCAAAGACTGTCTAA
TTACACATGGCAGGTTCTAGAGACTCGGGGAGAGCTGCTTTCAAGGCCGCTGCGCATCTG
TGCTCCCAGCCCAACCCTATTTGCCTTGTGTTCATTTTGTTCTTTTGTTACATGAGACTG
CAAAGACCAATAAAGCAATATATTTGAGAAGGACAAAAGGCTTGGGGGTGCCCACCATGT
GGGGGCACTACAAGAAGCCTTTGCTAGGGTCTCTTTTGTGCTGTGTGGTTTGTTTTGTTT
GCTCCTTTATTTTGTTTTGCTTGCCCAGTCTTCCCTTACCCTTGGATGCTTCTTATTCCT
CAGGCAAATCTGTGTTCAGGCTCTGCTTTAAAGCAAGCCTCAAGGCCGTCGGAGTTTCTG
TTTAGGGCATTAAAAATTCCCACAAGATATAAAGAGCAAATGTTTTTACATCTTTCTCAG
GATTAGAAGAATTACATAAATTAATAAACATTTTCAATGATGGAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12804837|gb|AAH01864.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12804837|gb|AAH01864.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               854-972, + strand, RNAz p=0.909679

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               854-972, + strand, RNAz p=0.909679

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001005912, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001005912, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               387-1188, gnl|bosTau2|chr22 (39207310-39206511)
               

               
               387-1188, gnl|Hg17|chr3 (48706679-48705885)
               

               
               387-1188, gnl|Mm7|chr9 (108507386-108508175)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               387-1188, gnl|bosTau2|chr22 (39207310-39206511)
               

               
               387-1188, gnl|Hg17|chr3 (48706679-48705885)
               

               
               387-1188, gnl|Mm7|chr9 (108507386-108508175)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	387-1188, gnl\|bosTau2\|chr22 (39207310-39206511)
	387-1188, gnl\|Hg17\|chr3 (48706679-48705885)
	387-1188, gnl\|Mm7\|chr9 (108507386-108508175)

	hyp (0.285673)
	fce (0.271592)
	nmm (0.265604)
	ecc (0.23007)
	nms (0.213858)
	nlu (0.191681)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)
	cty (0.10408)
	nbm (0.0993246)
	eje (0.0988338)