Non-Coding RNA Search

Ss1.1-Mixn-0022f03.5

Sequence:


               
               AACAGCAGTGCCCCCGACCTCAGCGGCTGCGACCTGCTGTGTTGCGGCCGTGGGCACCGC
CAGGAGAGCGTGCAGCTCGAGGAGAACTGCCTGTGCCGCTTCCACTGGTGCTGTGTGGTG
CAGTGCCACCGCTGCCGCGTGCGCAAGGAACTCAGCCTCTGCCTCTGACCCGCCACCGGC
CTCCCCAAACTGCGCGCGGAGCCGCCTCTCGGCACCTGCCGGACCTCCGAGCTCCAGCAG
GGGGCGTTGCTTGGCCCGCTTTCCCCCCGGAGAAAGTCCGTCTCCCAGGCCTCCTGGAAA
CTGAGGGGGGAAGGCGGGGTGCTTGGACTTAACGCCCGCTCAGGAAGGCCCAGGGCCCCG
GGGGGGCTCCGAGAGGCGCTCTGAGGGCCTCTGGGGAAGACTCTACAGACCTTTTCTCTC
CTTGGCTCCCAGATGGAAACCAAAGAGCCAGTTTCTGGGCCTCTGGAAGCAGGGCTCCCC
AGAACTGCTGGCTATGGGGTGGGTGGGTGAGTTTAGTATCAATAAAGAATATTTAAACCA
GTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGCAGTGCCCCCGACCTCAGCGGCTGCGACCTGCTGTGTTGCGGCCGTGGGCACCGC
CAGGAGAGCGTGCAGCTCGAGGAGAACTGCCTGTGCCGCTTCCACTGGTGCTGTGTGGTG
CAGTGCCACCGCTGCCGCGTGCGCAAGGAACTCAGCCTCTGCCTCTGACCCGCCACCGGC
CTCCCCAAACTGCGCGCGGAGCCGCCTCTCGGCACCTGCCGGACCTCCGAGCTCCAGCAG
GGGGCGTTGCTTGGCCCGCTTTCCCCCCGGAGAAAGTCCGTCTCCCAGGCCTCCTGGAAA
CTGAGGGGGGAAGGCGGGGTGCTTGGACTTAACGCCCGCTCAGGAAGGCCCAGGGCCCCG
GGGGGGCTCCGAGAGGCGCTCTGAGGGCCTCTGGGGAAGACTCTACAGACCTTTTCTCTC
CTTGGCTCCCAGATGGAAACCAAAGAGCCAGTTTCTGGGCCTCTGGAAGCAGGGCTCCCC
AGAACTGCTGGCTATGGGGTGGGTGGGTGAGTTTAGTATCAATAAAGAATATTTAAACCA
GTAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5305487|gb|AAD41674.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5305487|gb|AAD41674.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.832721
               

               
               386-543, + strand, RNAz p=0.984725

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.832721
               

               
               386-543, + strand, RNAz p=0.984725

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006522, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006522, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-543, gnl|bosTau2|chr2 (64854900-64855434)
               

               
               1-543, gnl|Hg17|chr2 (219563905-219564460)
               

               
               1-543, gnl|Mm7|chr1 (75024113-75024628)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-543, gnl|bosTau2|chr2 (64854900-64855434)
               

               
               1-543, gnl|Hg17|chr2 (219563905-219564460)
               

               
               1-543, gnl|Mm7|chr1 (75024113-75024628)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               amn (0.835422)
               

               
               cga (0.279096)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               cga (0.279096)
               

               
               pla (0.133672)

	1-119, - strand, RNAz p=0.832721
	386-543, + strand, RNAz p=0.984725

	1-543, gnl\|bosTau2\|chr2 (64854900-64855434)
	1-543, gnl\|Hg17\|chr2 (219563905-219564460)
	1-543, gnl\|Mm7\|chr1 (75024113-75024628)