Non-Coding RNA Search

Ss1.1-Mixn-0022g09.5

Sequence:


               
               GGTGACAATTGCTAGGCGGAGACGGTTTGGTGAAGAAAGATCTAAGAAAGGATCTGGACT
GGCGGAATATAAGTTCCAAGAGAACAGGGACCTCATGAACAGGGAACTGTTTCATTAAGA
CCTGCATCTGCAGTACTATTTTATCTACCAGGCACGTAACAAAATCTCCACAAATAATAG
GAGATAGTTAACTGAGAGGAATCTGCTCTACTGCTGCAGCCGAACCAGATGCCTTCTTCT
TCACCAGACCAAGAAGATGACCTGGAGGCCTGTGTTTTAAGATTTTCAGACCTGGATTTG
AAAAGCACAAGTCTTATCAATCCCAGTAGCAGTCTCAAAGCAGAGTTAGATATCAGTACA
AAGAAGAAATACTCATTTGCAAAGAAAAAGGCATTTGCTCTTTTGGTCAAAACTAAAGAA
GTTCCAGCACCTCCTTTTGAATGTAAAGAAAAATGGTGGAAATGCTGTCAGCAACTATTC
ACAGACCAGACCAGCATCCATAGACATGTGGCAACACAACACGCTGATGAGATTTGCCAG
GAGACTATTTTGGTTTTAAAGCAGCTGGCTGCAACATCGAGCACCTTCAAGAGTCTTAAG
TCTACAGACCAAAGGCACCCTGTCCAAGAGGCCCTTACTCATAACCACGAAGTGTCTGCT
TGGCTCCCTGATATAAGCTGCATTAGCCCTGATGAGCTGATTAGTGGCCAGGACAGCAAT
GACGGGGAGGTGCTGCTTTATTACTGCTACTGTGACCTGGAGGATCCTGCCTGGATCTGT
ACCTGGCAGACAGCTCTGTGTCAGCATCTGCACCTCACTGGCAAGGTTCGAATCGCTACG
GAAGGAATCAATGGGACAGTTGGTGGAAGCAAACTGGCCACCAGACTCTATGTGGAAATC
ATGCTTTCCTGCCCGATGTTTAAGGATTATCTGTGTAAGGATGATTTTAAGACCAGCAAA
GGAGGAGCTTGCTGTTTTCCAGAATTGCGTGTTGGTGTATTTGAAGAAATTGTGCCCATG
GGGATCAGTCCCAAAAAGGTCTCCTATAAGAAGCCTGGAATCCATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGACAATTGCTAGGCGGAGACGGTTTGGTGAAGAAAGATCTAAGAAAGGATCTGGACT
GGCGGAATATAAGTTCCAAGAGAACAGGGACCTCATGAACAGGGAACTGTTTCATTAAGA
CCTGCATCTGCAGTACTATTTTATCTACCAGGCACGTAACAAAATCTCCACAAATAATAG
GAGATAGTTAACTGAGAGGAATCTGCTCTACTGCTGCAGCCGAACCAGATGCCTTCTTCT
TCACCAGACCAAGAAGATGACCTGGAGGCCTGTGTTTTAAGATTTTCAGACCTGGATTTG
AAAAGCACAAGTCTTATCAATCCCAGTAGCAGTCTCAAAGCAGAGTTAGATATCAGTACA
AAGAAGAAATACTCATTTGCAAAGAAAAAGGCATTTGCTCTTTTGGTCAAAACTAAAGAA
GTTCCAGCACCTCCTTTTGAATGTAAAGAAAAATGGTGGAAATGCTGTCAGCAACTATTC
ACAGACCAGACCAGCATCCATAGACATGTGGCAACACAACACGCTGATGAGATTTGCCAG
GAGACTATTTTGGTTTTAAAGCAGCTGGCTGCAACATCGAGCACCTTCAAGAGTCTTAAG
TCTACAGACCAAAGGCACCCTGTCCAAGAGGCCCTTACTCATAACCACGAAGTGTCTGCT
TGGCTCCCTGATATAAGCTGCATTAGCCCTGATGAGCTGATTAGTGGCCAGGACAGCAAT
GACGGGGAGGTGCTGCTTTATTACTGCTACTGTGACCTGGAGGATCCTGCCTGGATCTGT
ACCTGGCAGACAGCTCTGTGTCAGCATCTGCACCTCACTGGCAAGGTTCGAATCGCTACG
GAAGGAATCAATGGGACAGTTGGTGGAAGCAAACTGGCCACCAGACTCTATGTGGAAATC
ATGCTTTCCTGCCCGATGTTTAAGGATTATCTGTGTAAGGATGATTTTAAGACCAGCAAA
GGAGGAGCTTGCTGTTTTCCAGAATTGCGTGTTGGTGTATTTGAAGAAATTGTGCCCATG
GGGATCAGTCCCAAAAAGGTCTCCTATAAGAAGCCTGGAATCCATTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61885945|ref|XP_582493.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61885945|ref|XP_582493.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               179-825, gnl|bosTau2|chr3 (12649693-12649058)
               

               
               179-825, gnl|Hg17|chr9 (97469451-97459594)
               

               
               179-825, gnl|Mm7|chr4 (46149410-46143041)
               


               
               826-1068, gnl|bosTau2|chr3 (12648973-12648731)
               

               
               826-1068, gnl|Hg17|chr9 (97453535-97448088)
               

               
               826-1068, gnl|Mm7|chr4 (46138838-46134370)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-825, gnl|bosTau2|chr3 (12649693-12649058)
               

               
               179-825, gnl|Hg17|chr9 (97469451-97459594)
               

               
               179-825, gnl|Mm7|chr4 (46149410-46143041)
               


               
               826-1068, gnl|bosTau2|chr3 (12648973-12648731)
               

               
               826-1068, gnl|Hg17|chr9 (97453535-97448088)
               

               
               826-1068, gnl|Mm7|chr4 (46138838-46134370)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               isp (0.150376)
               

               
               cst (0.140036)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               clu (0.119646)

	179-825, gnl\|bosTau2\|chr3 (12649693-12649058)
	179-825, gnl\|Hg17\|chr9 (97469451-97459594)
	179-825, gnl\|Mm7\|chr4 (46149410-46143041)

	826-1068, gnl\|bosTau2\|chr3 (12648973-12648731)
	826-1068, gnl\|Hg17\|chr9 (97453535-97448088)
	826-1068, gnl\|Mm7\|chr4 (46138838-46134370)