Non-Coding RNA Search

Ss1.1-Mixn-0022g22.5

Sequence:


               
               CTTAAATGTCTTGTCAACTGGATGCGAATTTTGCACTTGGTGTCTTTATCTTTTTTTTTT
TTTTTTAATCAAGGAAATACCCAGAGCAGACAGTGGTTATACCAAAGGTTATCAAATAAA
TACAAGGAGCTTCCTGGTCGCAGGCATGCCAGGAGGTACACTGCGTCACGGAGGATGTCT
GCTGCTGATGAATGTGTGTGGGGGAAGCCAGAGTTTGCCCTGTATAAGGTGTAGACATAT
AGGGTGTATAAGGTGCATCCGAATCCTTACACACCGAAATGTATTTTAAGAATCTCCATC
CCTTGTTCATTCCCTTTTCTTAAAGAACAGAACATGGTAATATTTTGGTACTTGTGTTTG
CCGCTGCCCTGCTCCTCGCAGTCCCATGGACAGATTTCAGTTGGATTTCCAAGACCTAGC
AGTTCTAAGGCATCTTGAAGCAAATAGGTTATGGCTGGAAATACAGGGAAGGCGATGGCT
TTGTAAATCGGTTTACATTTCTCTCCTTGAGTTTTTCTAGGGTCGTAGTGCTTCCGAATC
ATTTAATGACGCTGTTGGCAATCGTTTACTTTTCAATTGCAATCCGTAAAATAACATGTA
GAAAATTCTTAGTATTTAAGTGTAGTCTTCTCCATGAATCACCCGTTAGAATAGACTGGC
AGCCGTGGAATAGGCAGGAAATAAGCCTTTAGCTCATAGTCTCATTCCCCACCCTTTATG
CCTGCCTGCATCTGTGTAGGGGTGTGTGTGTGTCTGTGTGTATGTGTCTGTGTCTGTGTG
TATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGATTGGGGATGAGCAGACTATCTACACTG
TATGTTGCTAAGGTAATAAATAAATCAGTAATGCAATATTGTGGGTTCAAACTCCTCTTT
GCACTACTTTATTTACAGTAGTAAATAAAAATTATTTTTATACCATTAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAAATGTCTTGTCAACTGGATGCGAATTTTGCACTTGGTGTCTTTATCTTTTTTTTTT
TTTTTTAATCAAGGAAATACCCAGAGCAGACAGTGGTTATACCAAAGGTTATCAAATAAA
TACAAGGAGCTTCCTGGTCGCAGGCATGCCAGGAGGTACACTGCGTCACGGAGGATGTCT
GCTGCTGATGAATGTGTGTGGGGGAAGCCAGAGTTTGCCCTGTATAAGGTGTAGACATAT
AGGGTGTATAAGGTGCATCCGAATCCTTACACACCGAAATGTATTTTAAGAATCTCCATC
CCTTGTTCATTCCCTTTTCTTAAAGAACAGAACATGGTAATATTTTGGTACTTGTGTTTG
CCGCTGCCCTGCTCCTCGCAGTCCCATGGACAGATTTCAGTTGGATTTCCAAGACCTAGC
AGTTCTAAGGCATCTTGAAGCAAATAGGTTATGGCTGGAAATACAGGGAAGGCGATGGCT
TTGTAAATCGGTTTACATTTCTCTCCTTGAGTTTTTCTAGGGTCGTAGTGCTTCCGAATC
ATTTAATGACGCTGTTGGCAATCGTTTACTTTTCAATTGCAATCCGTAAAATAACATGTA
GAAAATTCTTAGTATTTAAGTGTAGTCTTCTCCATGAATCACCCGTTAGAATAGACTGGC
AGCCGTGGAATAGGCAGGAAATAAGCCTTTAGCTCATAGTCTCATTCCCCACCCTTTATG
CCTGCCTGCATCTGTGTAGGGGTGTGTGTGTGTCTGTGTGTATGTGTCTGTGTCTGTGTG
TATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGATTGGGGATGAGCAGACTATCTACACTG
TATGTTGCTAAGGTAATAAATAAATCAGTAATGCAATATTGTGGGTTCAAACTCCTCTTT
GCACTACTTTATTTACAGTAGTAAATAAAAATTATTTTTATACCATTAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5BT08_SCHJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BT08_SCHJA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               803-947, - strand, RNAz p=0.954866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               803-947, - strand, RNAz p=0.954866

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-223, gnl|bosTau2|chr6 (23019972-23019758)
               

               
               1-223, gnl|Hg17|chr4 (25426224-25426006)
               

               
               1-223, gnl|Mm7|chr5 (52481251-52481053)
               


               
               338-947, gnl|bosTau2|chr6 (23019650-23019058)
               

               
               338-947, gnl|Hg17|chr4 (25425901-25425326)
               

               
               338-947, gnl|Mm7|chr5 (52480964-52480392)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr6 (23019972-23019758)
               

               
               1-223, gnl|Hg17|chr4 (25426224-25426006)
               

               
               1-223, gnl|Mm7|chr5 (52481251-52481053)
               


               
               338-947, gnl|bosTau2|chr6 (23019650-23019058)
               

               
               338-947, gnl|Hg17|chr4 (25425901-25425326)
               

               
               338-947, gnl|Mm7|chr5 (52480964-52480392)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               lyg (1.33103)
               

               
               cbe (1.19617)
               

               
               sto (0.719295)
               

               
               cst (0.420109)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               tra (0.369276)
               

               
               rec (0.346141)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (1.33103)
               

               
               cbe (1.19617)
               

               
               sto (0.719295)
               

               
               cst (0.420109)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               tra (0.369276)
               

               
               rec (0.346141)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	1-223, gnl\|bosTau2\|chr6 (23019972-23019758)
	1-223, gnl\|Hg17\|chr4 (25426224-25426006)
	1-223, gnl\|Mm7\|chr5 (52481251-52481053)

	338-947, gnl\|bosTau2\|chr6 (23019650-23019058)
	338-947, gnl\|Hg17\|chr4 (25425901-25425326)
	338-947, gnl\|Mm7\|chr5 (52480964-52480392)

	lyg (1.33103)
	cbe (1.19617)
	sto (0.719295)
	cst (0.420109)
	sug (0.381874)
	cmu (0.372787)
	tra (0.369276)
	rec (0.346141)
	ece (0.229305)
	col (0.195008)
	sag (0.182715)
	duo (0.172801)
	eye (0.170503)
	isp (0.150376)
	pty (0.142714)
	bla (0.124347)
	clu (0.119646)
	ldo (0.0970026)