Non-Coding RNA Search

Ss1.1-Mixn-0022h10.5

Sequence:


               
               GCCATCACCCACCACGTGCTCTCGGGCAAATGGCTGATACACCTGGCACCTGGCTTCAAG
CTGGATCACGCCTGGGCTGGCATTGCTCGAGCCGTGGTCGAGGGCCGGCTTCAGGTAGCC
AAGGTGAGCCCACGGGCCAAGGAGGGTGGGCGGCAGGTCATCTGTGTTTATACGGACGAC
TTCACGGACCGCTTGGGTGTACTGGAGGCAGATGCCGCCATCCGCGCGGCAGGCATTAAG
TGTCTGCTCACCTACAAGCCTGACGTCTACACCTACCTGGGTATCTACCGGGCCAACCGC
TGGCACCTCTGCCCCACTCTCTATGAGAGCCGTTTCCAGCTGGGAGGCAGCGCCCGTGGC
TCCCGGGTGCTGGACCGCGCCAACAACGTGGAGCTGACCTAGTGGGACCAAATGGAAGAG
ACCACCCACTGCCTCCCCTGCGGGGGACGGATCCTCTCGTCTTCCCCCTCCTCGTCCCAC
GGAGGCCAAGCCCCCCAGCTCTGAGGACTAGGTTACTCGGAAACTGCCTGCATCTTCGGT
CCCTTTGAACTTTGGTCCTGTGTTCAGGGCTGACTCGAGTCCTCACTGGCTGGAGGCTCT
GGCTCCCTGAGGGCCGGACCCTCAGCCTCTCTTTGCCGCTGCTCCCCCCTGTCATCCAGG
ACCACGGGCTGGGTGCAGACGCCAGGAGGAGAGCCTGCCTTGGCTGCTCCCTCCCCTGGC
TCTTCCCTCCTCCTGCATCCTCCCCTTCTCTCCCTCCCTCACAAGAGAGACAGCCTCGTG
CTTCCATCCCTCTCCCTGGAGCCTTCACGGTCTAGGGGCAGAGGCCCCCGCAGGCCTGAG
CATGCCATTTTGTTGGGGACGGGTGATTGTTCCCACTCAGCACCTGGCAGAGAGAGGGGG
CCAGGGCCATGGACATGGGGCCTGCCCCTCCCTGCCACCTCAGAGCCCCTACCACCTTCC
CTCTTTCTTTGGCTACCTTATCATGTGCCTGCTTCTGGCATTTCAATAAAACCCAACTTG
GGTCTGTGTCTTGAGTGTTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATCACCCACCACGTGCTCTCGGGCAAATGGCTGATACACCTGGCACCTGGCTTCAAG
CTGGATCACGCCTGGGCTGGCATTGCTCGAGCCGTGGTCGAGGGCCGGCTTCAGGTAGCC
AAGGTGAGCCCACGGGCCAAGGAGGGTGGGCGGCAGGTCATCTGTGTTTATACGGACGAC
TTCACGGACCGCTTGGGTGTACTGGAGGCAGATGCCGCCATCCGCGCGGCAGGCATTAAG
TGTCTGCTCACCTACAAGCCTGACGTCTACACCTACCTGGGTATCTACCGGGCCAACCGC
TGGCACCTCTGCCCCACTCTCTATGAGAGCCGTTTCCAGCTGGGAGGCAGCGCCCGTGGC
TCCCGGGTGCTGGACCGCGCCAACAACGTGGAGCTGACCTAGTGGGACCAAATGGAAGAG
ACCACCCACTGCCTCCCCTGCGGGGGACGGATCCTCTCGTCTTCCCCCTCCTCGTCCCAC
GGAGGCCAAGCCCCCCAGCTCTGAGGACTAGGTTACTCGGAAACTGCCTGCATCTTCGGT
CCCTTTGAACTTTGGTCCTGTGTTCAGGGCTGACTCGAGTCCTCACTGGCTGGAGGCTCT
GGCTCCCTGAGGGCCGGACCCTCAGCCTCTCTTTGCCGCTGCTCCCCCCTGTCATCCAGG
ACCACGGGCTGGGTGCAGACGCCAGGAGGAGAGCCTGCCTTGGCTGCTCCCTCCCCTGGC
TCTTCCCTCCTCCTGCATCCTCCCCTTCTCTCCCTCCCTCACAAGAGAGACAGCCTCGTG
CTTCCATCCCTCTCCCTGGAGCCTTCACGGTCTAGGGGCAGAGGCCCCCGCAGGCCTGAG
CATGCCATTTTGTTGGGGACGGGTGATTGTTCCCACTCAGCACCTGGCAGAGAGAGGGGG
CCAGGGCCATGGACATGGGGCCTGCCCCTCCCTGCCACCTCAGAGCCCCTACCACCTTCC
CTCTTTCTTTGGCTACCTTATCATGTGCCTGCTTCTGGCATTTCAATAAAACCCAACTTG
GGTCTGTGTCTTGAGTGTTTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22550397|gb|AAN02287.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22550397|gb|AAN02287.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-159, - strand, RNAz p=0.928837
               

               
               200-359, - strand, RNAz p=0.981753
               

               
               551-1008, - strand, RNAz p=0.998789

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.928837
               

               
               200-359, - strand, RNAz p=0.981753
               

               
               551-1008, - strand, RNAz p=0.998789

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1040, gnl|bosTau2|chr29 (30526100-30525054)
               

               
               1-1040, gnl|Hg17|chr11 (65441907-65440864)
               

               
               1-1040, gnl|Mm7|chr19 (5321112-5322115)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1040, gnl|bosTau2|chr29 (30526100-30525054)
               

               
               1-1040, gnl|Hg17|chr11 (65441907-65440864)
               

               
               1-1040, gnl|Mm7|chr19 (5321112-5322115)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               clu (0.358938)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)

	1-159, - strand, RNAz p=0.928837
	200-359, - strand, RNAz p=0.981753
	551-1008, - strand, RNAz p=0.998789

	1-1040, gnl\|bosTau2\|chr29 (30526100-30525054)
	1-1040, gnl\|Hg17\|chr11 (65441907-65440864)
	1-1040, gnl\|Mm7\|chr19 (5321112-5322115)

	clu (0.358938)
	nlu (0.191681)
	fty (0.17584)
	nje (0.16592)
	csp (0.161186)
	hyp (0.142837)
	hlv (0.139256)
	nca (0.136874)
	ebs (0.118301)