Non-Coding RNA Search

Ss1.1-Mixn-0022h16.5

Sequence:


               
               CAACAATATGGAAATCCAAGTGGACATTGAAGCCAAACCAAGCCACTACCAGCTGGTGAG
TGGAAGCAGCACGGAGGACTCACTCCATGTTCATGCTCAGATGGTGGAGAATGAAGAAGA
AGGTGGTAGTAGTGGTGGCAACAATGAAGAGGATCCCCCCTGCAAACACCAAAGCTGTGA
ACAGAAAGACTGCCTGGCCAACAAAGCTTGGGACATCAGCCTGGCCCAGCCCGAGAGCAT
CCGCAGTGACCTGGAGAGCTCTGATACGCAATCAGATGATGTGCCAGACATCACCTCAGA
TGAGTGTGGCTCCCCTCACCCCCAGGCCGCAGCCTGTCCCTCGACACCCAGAGCCCCAGG
TGCACCGAGCCCAAGTGCCCATAGGAACCTCTCTGCCCCAGCTGAGGGGAAGACTGTCTT
GAAGCTGGAAGATGCAGAAGCCAGAGTATGAAGTGGAATGAATGCTCCTGTTCTGAGAAG
CACACTTGTAACTGCATCTTTTGACGTCTTTGGGGGGGGCGGGGGGCGGGCAGGGATTTA
TGTATTTTATTTCAGAGATTCTCTTGTCATAGGTTTTCCCCAGGAAAATTCTAAGGAATT
TGCAATTTCTTACCAGATAAAACATGGAAACTTTGCCCTAGTCCCACTCCCACACCCCCC
CACTCTTTTTTAGTTTTAATTTATTGGTTAAACTGATGGTGGCAATCCGTGAGGTGTGTC
AAAGAGTGTACAGATGTATGTGTGTATATTGTATGTATGCTAACATATTACTGAAGGACA
CATTTTAATAAAAATTTCTGTTGTAATTCAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACAATATGGAAATCCAAGTGGACATTGAAGCCAAACCAAGCCACTACCAGCTGGTGAG
TGGAAGCAGCACGGAGGACTCACTCCATGTTCATGCTCAGATGGTGGAGAATGAAGAAGA
AGGTGGTAGTAGTGGTGGCAACAATGAAGAGGATCCCCCCTGCAAACACCAAAGCTGTGA
ACAGAAAGACTGCCTGGCCAACAAAGCTTGGGACATCAGCCTGGCCCAGCCCGAGAGCAT
CCGCAGTGACCTGGAGAGCTCTGATACGCAATCAGATGATGTGCCAGACATCACCTCAGA
TGAGTGTGGCTCCCCTCACCCCCAGGCCGCAGCCTGTCCCTCGACACCCAGAGCCCCAGG
TGCACCGAGCCCAAGTGCCCATAGGAACCTCTCTGCCCCAGCTGAGGGGAAGACTGTCTT
GAAGCTGGAAGATGCAGAAGCCAGAGTATGAAGTGGAATGAATGCTCCTGTTCTGAGAAG
CACACTTGTAACTGCATCTTTTGACGTCTTTGGGGGGGGCGGGGGGCGGGCAGGGATTTA
TGTATTTTATTTCAGAGATTCTCTTGTCATAGGTTTTCCCCAGGAAAATTCTAAGGAATT
TGCAATTTCTTACCAGATAAAACATGGAAACTTTGCCCTAGTCCCACTCCCACACCCCCC
CACTCTTTTTTAGTTTTAATTTATTGGTTAAACTGATGGTGGCAATCCGTGAGGTGTGTC
AAAGAGTGTACAGATGTATGTGTGTATATTGTATGTATGCTAACATATTACTGAAGGACA
CATTTTAATAAAAATTTCTGTTGTAATTCAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26381832|dbj|BAC25474.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26381832|dbj|BAC25474.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               693-824, + strand, RNAz p=0.998715

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               693-824, + strand, RNAz p=0.998715

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK131439, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK131439, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               276-824, gnl|bosTau2|chr13 (9286840-9286287)
               

               
               276-824, gnl|Hg17|chr1 (33071675-33071148)
               

               
               276-824, gnl|Mm7|chr4 (128528665-128529169)
               


               
               689-817, gnl|bosTau2|chr10 (67948348-67948220)
               

               
               689-817, gnl|Hg17|chrY (3690058-3689955)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               276-824, gnl|bosTau2|chr13 (9286840-9286287)
               

               
               276-824, gnl|Hg17|chr1 (33071675-33071148)
               

               
               276-824, gnl|Mm7|chr4 (128528665-128529169)
               


               
               689-817, gnl|bosTau2|chr10 (67948348-67948220)
               

               
               689-817, gnl|Hg17|chrY (3690058-3689955)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               tes (0.415628)
               

               
               cki (0.330469)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cki (0.330469)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

	276-824, gnl\|bosTau2\|chr13 (9286840-9286287)
	276-824, gnl\|Hg17\|chr1 (33071675-33071148)
	276-824, gnl\|Mm7\|chr4 (128528665-128529169)

	689-817, gnl\|bosTau2\|chr10 (67948348-67948220)
	689-817, gnl\|Hg17\|chrY (3690058-3689955)

	tes (0.415628)
	cki (0.330469)
	ece (0.229305)
	jej (0.197844)
	fhi (0.169578)
	lnt (0.142308)
	csk (0.140746)
	che (0.136314)
	pgl (0.118483)