Non-Coding RNA Search

Ss1.1-Mixn-0022j12.5

Sequence:


               
               GTGGCCATCAGTCCGCTTGTTGCAGGTAGTGGAGAACACTGGAAACCAGAACTGGAAGAA
AAAATAGCGGACCTTGAAAAAGAAAAGGAGCAACTTCAAAAGAAGCTACAGGAAGTATTA
ACCTCTCGCAAGGCGATTCTAAAAAAGGCACAGGAGAAGGAAAGACATCTTCGGGAGGAG
CTGAAGCAACAGAAAGATGACTTTAATCACCTGCAAGAACAGTTTGATGAGCAAAGCAAG
GAAAATAAGGACATTGGGGACCAACTAAGGCAACTCCAGGTTCAAATAAGGGAGTCTATG
GACAGAAAACTCCCAGGCCATGGCCAGCAGGAAACAGGCTCTCCCACTCAAGGTTTAGAA
GAGCCTTTATACAAAGCCACAGAGCAGCAACCTGCTCACCCTGTTTCAGAGTCTGACTTG
TGCTCAGATTGGCCTCCTCGTCCTGGAAATACAGATGTGCTCCAGGGCAATACTGCTGTT
ATTGCCCAGATTAAGGCCCAGCTGAAAGAAATAGGGGCTGAGAAAGAAGAGTTAGAGTTG
AAGCTTAGCTCTACAACAGGTGAGCTGACTAAAAAAGCAGAAGAAGTATTTCAGTTACAA
GAGCAGATAAATAAACAGGATTTGGAAATCCAAAGTCTGAAGGCAGCGTCCCATGAAGCT
GAAGCCCATGCAGAAAGCCTGAGGCAGAAATTGGAAAGCAGTCAACTAGAAATTGCTGGA
TTAGAACATTTAAAAGAATTACAGCCTGAACTAGATGAACTCCAAAAACTCATAAGCAAA
AAGGAGGAAGAAGTTAAATACCTTTCTGGACAGCTGAGCGAGAAGGAAATGGCCCTTACT
AAAGTTCAGGCAGAGATAAGAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCCATCAGTCCGCTTGTTGCAGGTAGTGGAGAACACTGGAAACCAGAACTGGAAGAA
AAAATAGCGGACCTTGAAAAAGAAAAGGAGCAACTTCAAAAGAAGCTACAGGAAGTATTA
ACCTCTCGCAAGGCGATTCTAAAAAAGGCACAGGAGAAGGAAAGACATCTTCGGGAGGAG
CTGAAGCAACAGAAAGATGACTTTAATCACCTGCAAGAACAGTTTGATGAGCAAAGCAAG
GAAAATAAGGACATTGGGGACCAACTAAGGCAACTCCAGGTTCAAATAAGGGAGTCTATG
GACAGAAAACTCCCAGGCCATGGCCAGCAGGAAACAGGCTCTCCCACTCAAGGTTTAGAA
GAGCCTTTATACAAAGCCACAGAGCAGCAACCTGCTCACCCTGTTTCAGAGTCTGACTTG
TGCTCAGATTGGCCTCCTCGTCCTGGAAATACAGATGTGCTCCAGGGCAATACTGCTGTT
ATTGCCCAGATTAAGGCCCAGCTGAAAGAAATAGGGGCTGAGAAAGAAGAGTTAGAGTTG
AAGCTTAGCTCTACAACAGGTGAGCTGACTAAAAAAGCAGAAGAAGTATTTCAGTTACAA
GAGCAGATAAATAAACAGGATTTGGAAATCCAAAGTCTGAAGGCAGCGTCCCATGAAGCT
GAAGCCCATGCAGAAAGCCTGAGGCAGAAATTGGAAAGCAGTCAACTAGAAATTGCTGGA
TTAGAACATTTAAAAGAATTACAGCCTGAACTAGATGAACTCCAAAAACTCATAAGCAAA
AAGGAGGAAGAAGTTAAATACCTTTCTGGACAGCTGAGCGAGAAGGAAATGGCCCTTACT
AAAGTTCAGGCAGAGATAAGAGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.934282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.934282

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-863, gnl|bosTau2|chr1 (40633481-40632622)
               

               
               1-863, gnl|Hg17|chr3 (122898612-122897753)
               

               
               1-863, gnl|Mm7|chr16 (36622063-36622907)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-863, gnl|bosTau2|chr1 (40633481-40632622)
               

               
               1-863, gnl|Hg17|chr3 (122898612-122897753)
               

               
               1-863, gnl|Mm7|chr16 (36622063-36622907)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lun (0.150489)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               pla (0.133672)

	1-863, gnl\|bosTau2\|chr1 (40633481-40632622)
	1-863, gnl\|Hg17\|chr3 (122898612-122897753)
	1-863, gnl\|Mm7\|chr16 (36622063-36622907)