Non-Coding RNA Search

Ss1.1-Mixn-0022j22.5

Sequence:


               
               ATTGGATTGCTGGCAAAGCACAGAATGCCTGTATATGATGTAACTGTATCAAAAAATACT
GTCACATATTTTGTAAATTTTTACCTTGTAAAGTCACAAAAATAGTTTTTAAAGGAAAAA
GTACAGTATTCTTTTAATAAACTGGCTCGCAGTCTGGTAGGTCTACGGACCCCATAGCAC
AACAGGTTTATAGAGATGTATATAGAAATATTATAGTCCTTATTTTTTTTTGTCCTTTGT
GTGAAGCCTTTTGTAACAGATTAACAATCAACTGCATAAATATTATTAATATTTTAAAGA
GAAAGTTAAGTTGTATTTTGGTAATTCACAAACTATCATGCAAATAAAAACTCTGCACGT
AAGATAAGAATTAAATGATTTCAGATGAAAAGAACTTGTGTTAATTTACAGTCGATGTGG
TTTTAATACAAATACTGCCCTTAAACGTTTCTGGCAATGTACAGAAGTATTGTATATACT
TAAATATGTAATTGTTGTAAGAGGTAGGAAAACAAAATCATGGCAACACTTCCATTCAAT
TAAGTACACTAAACGAAAAGTTAAGTCCCCTTTTTTAACTTTTCAGTTTGGTTTGTGATG
AGAAAGAGTGGAGGTTTATATACTGTTTTGCTTAGAGAATTATAAGGACATGTTGAGAAA
GTGTTGAGCTTTATTTTGCTTTTTCATAGTAGATTCAGAAAGTAGGAACCAGATAGAGGT
GAAAAGGGGCCACTGAAAAGTGAATTTGATAGCTCAGCATTTAAGCATGATTACCTATTC
AGATAGCTTTTTTGCTTCCTATAAATATATGCATTGTGTGTGTAGTAATAGATGTAAGTT
TACACTTTGAAAGCAAATCTTATTTCAATGTTTATTATAAAAGCCTTGCTAATTTAGTAG
TGATGCTTTCTTTGGTTGTACAGGTGTACATTTGTAAACCTTTATGCTGTAAATGGAATT
TTGTCTTATCTCTTTGGGAAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGGATTGCTGGCAAAGCACAGAATGCCTGTATATGATGTAACTGTATCAAAAAATACT
GTCACATATTTTGTAAATTTTTACCTTGTAAAGTCACAAAAATAGTTTTTAAAGGAAAAA
GTACAGTATTCTTTTAATAAACTGGCTCGCAGTCTGGTAGGTCTACGGACCCCATAGCAC
AACAGGTTTATAGAGATGTATATAGAAATATTATAGTCCTTATTTTTTTTTGTCCTTTGT
GTGAAGCCTTTTGTAACAGATTAACAATCAACTGCATAAATATTATTAATATTTTAAAGA
GAAAGTTAAGTTGTATTTTGGTAATTCACAAACTATCATGCAAATAAAAACTCTGCACGT
AAGATAAGAATTAAATGATTTCAGATGAAAAGAACTTGTGTTAATTTACAGTCGATGTGG
TTTTAATACAAATACTGCCCTTAAACGTTTCTGGCAATGTACAGAAGTATTGTATATACT
TAAATATGTAATTGTTGTAAGAGGTAGGAAAACAAAATCATGGCAACACTTCCATTCAAT
TAAGTACACTAAACGAAAAGTTAAGTCCCCTTTTTTAACTTTTCAGTTTGGTTTGTGATG
AGAAAGAGTGGAGGTTTATATACTGTTTTGCTTAGAGAATTATAAGGACATGTTGAGAAA
GTGTTGAGCTTTATTTTGCTTTTTCATAGTAGATTCAGAAAGTAGGAACCAGATAGAGGT
GAAAAGGGGCCACTGAAAAGTGAATTTGATAGCTCAGCATTTAAGCATGATTACCTATTC
AGATAGCTTTTTTGCTTCCTATAAATATATGCATTGTGTGTGTAGTAATAGATGTAAGTT
TACACTTTGAAAGCAAATCTTATTTCAATGTTTATTATAAAAGCCTTGCTAATTTAGTAG
TGATGCTTTCTTTGGTTGTACAGGTGTACATTTGTAAACCTTTATGCTGTAAATGGAATT
TTGTCTTATCTCTTTGGGAAACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               484-640, - strand, RNAz p=0.979206

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               484-640, - strand, RNAz p=0.979206

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               567-652, + strand, RNAmicro p=0.999853

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               567-652, + strand, RNAmicro p=0.999853

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-984, gnl|bosTau2|chr11 (61306446-61305475)
               

               
               1-984, gnl|Hg17|chr2 (20372748-20371789)
               

               
               1-984, gnl|Mm7|chr12 (8776166-8777141)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr11 (61306446-61305475)
               

               
               1-984, gnl|Hg17|chr2 (20372748-20371789)
               

               
               1-984, gnl|Mm7|chr12 (8776166-8777141)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               cty (0.10408)

	1-984, gnl\|bosTau2\|chr11 (61306446-61305475)
	1-984, gnl\|Hg17\|chr2 (20372748-20371789)
	1-984, gnl\|Mm7\|chr12 (8776166-8777141)