Non-Coding RNA Search

Ss1.1-Mixn-0022m05.5

Sequence:


               
               CGTAGAGTCACTGAATTACCACTCTTCGTACAAGCGAGGGCTTTCCTATACTACTGTAGA
GTGTACGTGTGCAATCGGTTGATGAATTCATTTCCCTGGTGTATAGAAGAGCCAACACGA
GCAGCTTGGCAATCATTGGGTGCTATTTTAATTGTTTGTAGCGAGTGCTATTTCCTAGAT
GGAGCCAGTTAGGTTCGGCTGATCTACTGAATATCAAATGATGCCCTTCTTCCCACGTAG
ACTTTCAGCAAAAGCAGGTACTTGGAAGCCACAGGCTCCCCTTCTGTATCTACTCAATAA
TTACTAATGAAGAGACCTCCATAAGGGAGCACTTGGCTGTTATCGATAATACATGTACCA
ATTGTTAAATAATTAGTCGCCAAGCCATTCAGTGATGTCTGCAGCATCACTCTAGAACTG
TCTTGTTCTTGTCACTTTTTACTTCCCTCTGGGTGGGGCCATTCACCCAGTCCTGGAGGC
AAGTTAATCTTTTTCTCCAGTTAGTGACTTTGCCCCATGGGCGGGTAAGCACTTCCTAGA
TTGAGAAAAGCAGCTACAGTAAATCCTGCTCTGTTTCCCTTATTTGGTGATCATCCAATC
ACACATAAGCTCCTTGTATTCTCAATTTCATGCACTTCTCCCAGATGCTCTAGAATTTTC
TCTCACTGTTGCCAGTGGAGGTCACCCAGACAGTGAGTTCATATCTTATGGTTTTGTGCA
ATCATCGTATTGTAGTCCTAAGACTCATTATAGTGTATTTTTGATATTTTTGAAATGTGT
TAAATTTTTTAATTCAATAATATGAGCCAGAGCATGTTGCAGCAAATCTATTGTTTGTAA
AAAATAACAATAATAAATAAAATAAAATGGAGTATCTTTTTCATGGCTTTGTTTTAAAAT
GGAGAATACCTGTTATTTTGTAAGTACTTTATTTTAGCATGGAACTGTAATTTTCTCTAA
CTTGTATGTATGTAGAATTAGTTTCTTAATCAAAAGCAACTTTAGGATTTTACTGCTTTT
TCTTGCTTTAGGGGAAGACTGCAAATAAAAACCACATTCCATGACACTATGAAGCTCTCA
GTTAAGGCAAGAGTAAATATTTTTGATCACCTTCTAAGCTGAAATAGCAATAAAGATTTT
TTTACATTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTAGAGTCACTGAATTACCACTCTTCGTACAAGCGAGGGCTTTCCTATACTACTGTAGA
GTGTACGTGTGCAATCGGTTGATGAATTCATTTCCCTGGTGTATAGAAGAGCCAACACGA
GCAGCTTGGCAATCATTGGGTGCTATTTTAATTGTTTGTAGCGAGTGCTATTTCCTAGAT
GGAGCCAGTTAGGTTCGGCTGATCTACTGAATATCAAATGATGCCCTTCTTCCCACGTAG
ACTTTCAGCAAAAGCAGGTACTTGGAAGCCACAGGCTCCCCTTCTGTATCTACTCAATAA
TTACTAATGAAGAGACCTCCATAAGGGAGCACTTGGCTGTTATCGATAATACATGTACCA
ATTGTTAAATAATTAGTCGCCAAGCCATTCAGTGATGTCTGCAGCATCACTCTAGAACTG
TCTTGTTCTTGTCACTTTTTACTTCCCTCTGGGTGGGGCCATTCACCCAGTCCTGGAGGC
AAGTTAATCTTTTTCTCCAGTTAGTGACTTTGCCCCATGGGCGGGTAAGCACTTCCTAGA
TTGAGAAAAGCAGCTACAGTAAATCCTGCTCTGTTTCCCTTATTTGGTGATCATCCAATC
ACACATAAGCTCCTTGTATTCTCAATTTCATGCACTTCTCCCAGATGCTCTAGAATTTTC
TCTCACTGTTGCCAGTGGAGGTCACCCAGACAGTGAGTTCATATCTTATGGTTTTGTGCA
ATCATCGTATTGTAGTCCTAAGACTCATTATAGTGTATTTTTGATATTTTTGAAATGTGT
TAAATTTTTTAATTCAATAATATGAGCCAGAGCATGTTGCAGCAAATCTATTGTTTGTAA
AAAATAACAATAATAAATAAAATAAAATGGAGTATCTTTTTCATGGCTTTGTTTTAAAAT
GGAGAATACCTGTTATTTTGTAAGTACTTTATTTTAGCATGGAACTGTAATTTTCTCTAA
CTTGTATGTATGTAGAATTAGTTTCTTAATCAAAAGCAACTTTAGGATTTTACTGCTTTT
TCTTGCTTTAGGGGAAGACTGCAAATAAAAACCACATTCCATGACACTATGAAGCTCTCA
GTTAAGGCAAGAGTAAATATTTTTGATCACCTTCTAAGCTGAAATAGCAATAAAGATTTT
TTTACATTAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               436-585, - strand, RNAz p=0.985432
               

               
               623-776, - strand, RNAz p=0.880646

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-585, - strand, RNAz p=0.985432
               

               
               623-776, - strand, RNAz p=0.880646

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               474-585, 1373597 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537419.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, 1407662 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN549368.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, 1404974 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN742280.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, LB0231.CR_P11 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|DV851876.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, 1593669 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY460984.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, 1599205 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY462157.1|), 
blast E-value=9e-37, identity=93.81%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               474-585, 1373597 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537419.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, 1407662 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN549368.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, 1404974 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN742280.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, LB0231.CR_P11 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|DV851876.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, 1593669 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY460984.1|), 
blast E-value=9e-37, identity=93.81% 
               

               
               474-585, 1599205 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY462157.1|), 
blast E-value=9e-37, identity=93.81%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1150, gnl|bosTau2|chr18 (32570186-32571339)
               

               
               3-1150, gnl|Hg17|chr16 (70237228-70236093)
               

               
               3-1150, gnl|Mm7|chr8 (108543938-108544970)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1150, gnl|bosTau2|chr18 (32570186-32571339)
               

               
               3-1150, gnl|Hg17|chr16 (70237228-70236093)
               

               
               3-1150, gnl|Mm7|chr8 (108543938-108544970)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               aor (0.195274)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	436-585, - strand, RNAz p=0.985432
	623-776, - strand, RNAz p=0.880646

	474-585, 1373597 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN537419.1\|), blast E-value=9e-37, identity=93.81%
	474-585, 1407662 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN549368.1\|), blast E-value=9e-37, identity=93.81%
	474-585, 1404974 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN742280.1\|), blast E-value=9e-37, identity=93.81%
	474-585, LB0231.CR_P11 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb\|DV851876.1\|), blast E-value=9e-37, identity=93.81%
	474-585, 1593669 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY460984.1\|), blast E-value=9e-37, identity=93.81%
	474-585, 1599205 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY462157.1\|), blast E-value=9e-37, identity=93.81%

	3-1150, gnl\|bosTau2\|chr18 (32570186-32571339)
	3-1150, gnl\|Hg17\|chr16 (70237228-70236093)
	3-1150, gnl\|Mm7\|chr8 (108543938-108544970)

	aor (0.195274)
	cki (0.165235)
	fco (0.157208)
	bla (0.124347)
	spc (0.113366)