Non-Coding RNA Search

Ss1.1-Mixn-0022m08.5

Sequence:


               
               AAAAGTTCAGTTGAAAGCATTTAAATATGGCTCCCTCCATTAAAAAATAATAATAACAAC
ACTGTGGTGAGAAAGTACCATCTTCAGTGCCAATCAGGTTATTGCAAAGGCCTAAAAGAT
TTGCATTTTATTGTCTATCATATTATGTTATTCAGTGGGAATGATGCTTTTTTATAAGTA
TGAGTCTTACCAATAATCTAAGGGTTTAACACCTTTGAGTATTTTAATGGCCAAGTTGCT
GCTGAACTTGTAACAAATCAGGGGGTCAAAAAACTTGCTCTCATCTTTTCAAATTGTCTT
CTGTATCTGTTAATGTACCAGTCATCCCAAAGCGTTCATCTGGAGTGGTTTACCATCCAC
CTAGGTTATTCAGCCAACTTTTGCGAGAAATGTGCCCAAAGTGGCTTTATAGAAAGAGAT
TTGGTTTAGCAGGAATAATGAGGTCATGGCGTTTATCCATGAGTATCTGTGACCTAATTT
GGGTGGTTCAGGGTTAAGCCATTCTGGTACTAGTCCTGTTTAACTACGCTAAATTTTGAG
CCCTTGCCACCACACATGCACAGAGCAGTTTGTGGGGTGATAATACTTAATGAAATAATC
ATGATTTTAATTTCTTCTAATACTACTTTACATTTTCCATAAGGGGATGATGTGGGGGGT
ATTGCTCTTTCAAGCTTTATTTTTAAGAGTGCAAAGTCAGAAAGGCAACAAAGGGCCTGT
GAGTGGCTGGCTCGGCTTGAGATATTGCAGGTAGAATTGAAATGAAGTTGATGTGACAGC
TTTTATTCGTACTGGTCTTCACTAAAGGATGCCTTTTCAATTCATTTCTCTCTTGAATTA
AATGTCTTTCACTGTACATCACAGTAGCTGGAGTCCATGCCTTTTAAGCATGCGTAAAGA
GTTCTTTCAGTAATGTTTCATGAAAGGCAAACCAAATTCTGCTATAATCTCTAACGAATT
TCTGAATAATGCATTGCTCTGGAAAACAAGGCCTTTTTCGCTTGTGTTGTCTGTTAACAT
GAATGTACAGGATCATGACTACTAAGACTGTGTTCTCTGCCTTGCTTTGTCTTTTATTTG
TGGATCTAATCTAGTATTAGGCCACATTAACTGCTTAAGGCATCAAAGCCATATGGCATG
GGGAATGCATTTCTTCAGTGTTTCTTCTAGAGACTTTCCATTTCCTTGGAGTCATGGAGG
CAAGTAAGTATCACAGTATTAAGAAATTCACCCAAACCTGAGTTGTGCCTTCCTTTACTC
ACAAGGCATGTGGTTTTTGTTTTATTTTGTTTTGTTTTGGGGGGAGGGGTGGGGGTTTGT
CCTGGTGATCGATTTGTAAGCCTTCTTCCCTCTGGCTCCTAAATAAAAGCAAAGTGATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGTTCAGTTGAAAGCATTTAAATATGGCTCCCTCCATTAAAAAATAATAATAACAAC
ACTGTGGTGAGAAAGTACCATCTTCAGTGCCAATCAGGTTATTGCAAAGGCCTAAAAGAT
TTGCATTTTATTGTCTATCATATTATGTTATTCAGTGGGAATGATGCTTTTTTATAAGTA
TGAGTCTTACCAATAATCTAAGGGTTTAACACCTTTGAGTATTTTAATGGCCAAGTTGCT
GCTGAACTTGTAACAAATCAGGGGGTCAAAAAACTTGCTCTCATCTTTTCAAATTGTCTT
CTGTATCTGTTAATGTACCAGTCATCCCAAAGCGTTCATCTGGAGTGGTTTACCATCCAC
CTAGGTTATTCAGCCAACTTTTGCGAGAAATGTGCCCAAAGTGGCTTTATAGAAAGAGAT
TTGGTTTAGCAGGAATAATGAGGTCATGGCGTTTATCCATGAGTATCTGTGACCTAATTT
GGGTGGTTCAGGGTTAAGCCATTCTGGTACTAGTCCTGTTTAACTACGCTAAATTTTGAG
CCCTTGCCACCACACATGCACAGAGCAGTTTGTGGGGTGATAATACTTAATGAAATAATC
ATGATTTTAATTTCTTCTAATACTACTTTACATTTTCCATAAGGGGATGATGTGGGGGGT
ATTGCTCTTTCAAGCTTTATTTTTAAGAGTGCAAAGTCAGAAAGGCAACAAAGGGCCTGT
GAGTGGCTGGCTCGGCTTGAGATATTGCAGGTAGAATTGAAATGAAGTTGATGTGACAGC
TTTTATTCGTACTGGTCTTCACTAAAGGATGCCTTTTCAATTCATTTCTCTCTTGAATTA
AATGTCTTTCACTGTACATCACAGTAGCTGGAGTCCATGCCTTTTAAGCATGCGTAAAGA
GTTCTTTCAGTAATGTTTCATGAAAGGCAAACCAAATTCTGCTATAATCTCTAACGAATT
TCTGAATAATGCATTGCTCTGGAAAACAAGGCCTTTTTCGCTTGTGTTGTCTGTTAACAT
GAATGTACAGGATCATGACTACTAAGACTGTGTTCTCTGCCTTGCTTTGTCTTTTATTTG
TGGATCTAATCTAGTATTAGGCCACATTAACTGCTTAAGGCATCAAAGCCATATGGCATG
GGGAATGCATTTCTTCAGTGTTTCTTCTAGAGACTTTCCATTTCCTTGGAGTCATGGAGG
CAAGTAAGTATCACAGTATTAAGAAATTCACCCAAACCTGAGTTGTGCCTTCCTTTACTC
ACAAGGCATGTGGTTTTTGTTTTATTTTGTTTTGTTTTGGGGGGAGGGGTGGGGGTTTGT
CCTGGTGATCGATTTGTAAGCCTTCTTCCCTCTGGCTCCTAAATAAAAGCAAAGTGATTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-898, gnl|bosTau2|chr19 (15976324-15977248)
               

               
               2-898, gnl|Hg17|chr17 (25817122-25818006)
               

               
               2-898, gnl|Mm7|chr11 (76862584-76861728)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-898, gnl|bosTau2|chr19 (15976324-15977248)
               

               
               2-898, gnl|Hg17|chr17 (25817122-25818006)
               

               
               2-898, gnl|Mm7|chr11 (76862584-76861728)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               pro (0.512033)
               

               
               bla (0.248694)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               bla (0.248694)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	2-898, gnl\|bosTau2\|chr19 (15976324-15977248)
	2-898, gnl\|Hg17\|chr17 (25817122-25818006)
	2-898, gnl\|Mm7\|chr11 (76862584-76861728)

	pro (0.512033)
	bla (0.248694)
	fcc (0.197785)
	col (0.195008)
	sto (0.179824)
	eli (0.151814)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	csk (0.140746)
	ova (0.129132)
	jca (0.11396)
	cty (0.10408)