Non-Coding RNA Search

Ss1.1-Mixn-0022m19.5

Sequence:


               
               ACTTAGGCTGGGCTAAGTGGGAGGGGTTATCATTCCCCCCCCGCCATCGATGCCTGAAAG
GAGTCTCAAAACCAAAGGTAACAGGATTGGGATGGGGGAGGGTACAAAATTAGGATATGA
AGTCATGTGATGCCTGAGAACCCTGGAGTGACACCCTCTCAGCGCTGCCTAATGCTGGTA
TTGGGGAGGAGCGAGGGCAGGTCTCAGAGAGTAACCTCCTCCCTCATGGTGGGAGATCAT
ATCCCCAACCCCAGGGACCTCTTTATCTTAATCTATTTATTTAGCATCCCAAGGAAGGAT
TTCCAGTAGTAATTTATGTGACCTGGGGGCAGGATACTATCAGTGAGGTGCCCAGAGCTG
CATCCTTTCCTCCATGTCGCATCCCTTTACCCACCAGAGTCGTGGTTCCAGCAGGGGTCT
GGGGGCATACCTCCCTCCGTATCTGAATGTCTCAATCCAAAACTTGAAGCTCGTTTGACC
AACAGATTGGTGAGAGAAGAAAGGAGCTTAACCTCCCAGCCCCTGCTTCATAACATTTGC
ATCCGAAAGCTGTGCCCAGACCAGGCCTACTAGGCAGCCAAAGGGGCAAGGAGAACCCAG
CCCCAATCCCAGAATTTTTCCAAGCTCCCTGACCTTATGAAGTTTTCACCCCCCAATTCC
AACTATCCTGATCCCTTCTTATACCTTGCTTGGCATTTATCTGCATGTGGTCATCTGCTG
TGGCCGGGTGTGTAACGGGTTAAAAAGCCACTGCCTGACATCCCAACATTTGACGCCCCA
GCAATGTGTGACTCCCCCAACATTCCACTATGCCATTCTGCAGCTGAAATGGGAATGCTG
GCTGCCTTTCCAGCTCCAAATTCTTGGACAGAGGATCTGAGAGGTGGAGGCCATGCCAGA
GGACTTGGGGAAAATGAGAGGGAGGAAGGAAACAGGGAGATGAAGCTGAGCTAAGGCTTA
ACTCCTACTGAGTGAGAGGAAAACAGGCCAAAAATACCACCCCGGGAGAGGACCTCACCC
CAAGCAAGCCAGTAAGCAGCCCTGCCAGACTACCGCCCGACTAAGAAATCCAGACGCTAT
CGTCAGGGCCTGGCTTTTCTGCCAAATGACTGTGTGGAAACCAAAATGGGCCCGCCTGTG
TTCTTCCTAGCTCCCACCCTCCCGTGCTGCTGTGCTCTGCTCCTCCCCACACCTCCCTGC
TATAGTTCCCAGCTGCTGTAAGGGAGCTGCCTCCAACTCTTAACAATAAATCAAGTTCAT
TACAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTAGGCTGGGCTAAGTGGGAGGGGTTATCATTCCCCCCCCGCCATCGATGCCTGAAAG
GAGTCTCAAAACCAAAGGTAACAGGATTGGGATGGGGGAGGGTACAAAATTAGGATATGA
AGTCATGTGATGCCTGAGAACCCTGGAGTGACACCCTCTCAGCGCTGCCTAATGCTGGTA
TTGGGGAGGAGCGAGGGCAGGTCTCAGAGAGTAACCTCCTCCCTCATGGTGGGAGATCAT
ATCCCCAACCCCAGGGACCTCTTTATCTTAATCTATTTATTTAGCATCCCAAGGAAGGAT
TTCCAGTAGTAATTTATGTGACCTGGGGGCAGGATACTATCAGTGAGGTGCCCAGAGCTG
CATCCTTTCCTCCATGTCGCATCCCTTTACCCACCAGAGTCGTGGTTCCAGCAGGGGTCT
GGGGGCATACCTCCCTCCGTATCTGAATGTCTCAATCCAAAACTTGAAGCTCGTTTGACC
AACAGATTGGTGAGAGAAGAAAGGAGCTTAACCTCCCAGCCCCTGCTTCATAACATTTGC
ATCCGAAAGCTGTGCCCAGACCAGGCCTACTAGGCAGCCAAAGGGGCAAGGAGAACCCAG
CCCCAATCCCAGAATTTTTCCAAGCTCCCTGACCTTATGAAGTTTTCACCCCCCAATTCC
AACTATCCTGATCCCTTCTTATACCTTGCTTGGCATTTATCTGCATGTGGTCATCTGCTG
TGGCCGGGTGTGTAACGGGTTAAAAAGCCACTGCCTGACATCCCAACATTTGACGCCCCA
GCAATGTGTGACTCCCCCAACATTCCACTATGCCATTCTGCAGCTGAAATGGGAATGCTG
GCTGCCTTTCCAGCTCCAAATTCTTGGACAGAGGATCTGAGAGGTGGAGGCCATGCCAGA
GGACTTGGGGAAAATGAGAGGGAGGAAGGAAACAGGGAGATGAAGCTGAGCTAAGGCTTA
ACTCCTACTGAGTGAGAGGAAAACAGGCCAAAAATACCACCCCGGGAGAGGACCTCACCC
CAAGCAAGCCAGTAAGCAGCCCTGCCAGACTACCGCCCGACTAAGAAATCCAGACGCTAT
CGTCAGGGCCTGGCTTTTCTGCCAAATGACTGTGTGGAAACCAAAATGGGCCCGCCTGTG
TTCTTCCTAGCTCCCACCCTCCCGTGCTGCTGTGCTCTGCTCCTCCCCACACCTCCCTGC
TATAGTTCCCAGCTGCTGTAAGGGAGCTGCCTCCAACTCTTAACAATAAATCAAGTTCAT
TACAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-425, gnl|bosTau2|chr21 (34382733-34383153)
               

               
               1-425, gnl|Hg17|chr15 (41609842-41610255)
               

               
               1-425, gnl|Mm7|chr2 (121049057-121049436)
               


               
               432-1264, gnl|bosTau2|chr21 (34383182-34384011)
               

               
               432-1264, gnl|Hg17|chr15 (41610284-41611101)
               

               
               432-1264, gnl|Mm7|chr2 (121049465-121050285)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-425, gnl|bosTau2|chr21 (34382733-34383153)
               

               
               1-425, gnl|Hg17|chr15 (41609842-41610255)
               

               
               1-425, gnl|Mm7|chr2 (121049057-121049436)
               


               
               432-1264, gnl|bosTau2|chr21 (34383182-34384011)
               

               
               432-1264, gnl|Hg17|chr15 (41610284-41611101)
               

               
               432-1264, gnl|Mm7|chr2 (121049465-121050285)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               fcc (0.593354)
               

               
               hyp (0.571347)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               cki (0.165235)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               hyp (0.571347)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               amn (0.417711)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               cki (0.165235)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-425, gnl\|bosTau2\|chr21 (34382733-34383153)
	1-425, gnl\|Hg17\|chr15 (41609842-41610255)
	1-425, gnl\|Mm7\|chr2 (121049057-121049436)

	432-1264, gnl\|bosTau2\|chr21 (34383182-34384011)
	432-1264, gnl\|Hg17\|chr15 (41610284-41611101)
	432-1264, gnl\|Mm7\|chr2 (121049465-121050285)

	fcc (0.593354)
	hyp (0.571347)
	fbs (0.526039)
	fhi (0.508733)
	amn (0.417711)
	cov (0.264306)
	mas (0.210305)
	cki (0.165235)
	nca (0.136874)
	nmm (0.132802)
	sug (0.127291)
	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)
	spc (0.113366)