Non-Coding RNA Search

Ss1.1-Mixn-0022n07.5

Sequence:


               
               CTGCCTCCTGCGGGAAGCCGGGATCCTGGGCTGGGAGTGCGGGCTGACTCTGCGGGTTGT
ATCCCTGTGCAGCCATGACAACCGCCATCCTGCAGCGCCTAAGCACCCTGTCGGTGAGCG
GGCAGCATCTGCGCCGCCTGCCCAAGATCCTGGAGGACGGGCTGCCCAAGATGCCTGGCA
CTGTGCCCGAGACCGACGTGCCCCAGCTCTTCCGGGAGCCTTACATCCGCGCCGGGTACC
GCCCCATCGGCCACGAGTGGCGTTACTACTTCTTCAGCCTCTTTCAGAAACACAACGAGG
TGGTCAACGTGTGGACCCACCTGCTGGCGGCCCTGGCCGTCCTCCTGCGGTTCTGGGCCT
TCGTGGAGACCGAGGGCCTGCCCTGGACCTCTGCTCACACCCTGCCCCTGCTCCTCTACG
TCCTGTCCTCCATCACTTACCTCACCTTCAGCCTGCTGGCCCACCTGCTGCAGTCCAAGT
CCGAGCTCTCCCACTACACCTTCTACTTCGTGGACTACGTGGGTGTGAGCGTGTACCAGT
ACGGCAGCGCCCTGGTCCACTTCTTCTACGCCTCCGACCAGGCCTGGTACGAGCGCTTCT
GGCTCTTCTTCCCTGCCCGCGGCCGCCTTCTGCGGCTGGTTATCTTGCACCGGCTGCTGC
TACGCCAAGTACCGTTACCGCCGGCCCTACCCGGTCATGAGGAAGGTCTGCCAAGTGGTG
CCCGCGGGGCTGGCCTTCATCCTGGACATCAGCCCCGTGGCGCACCGCGTGGCCCTGTGC
CACCTGTCTGGCTGCCAGGAGCAGGCCGCGTGGTACCACACCCTCCAGATCGTCTTCTTT
CTGGTCAGCGCCTACTTCTTCTCCTGCCCAGTTCCGGAGAAGTACTTTCCCGGTTCCTGT
GACATCGTGGGCCACGGCCATCAGATCTTCCACGCCTTTCTGTCCATCTGCACACTCTCT
CAGCTGGAGGCCATCCTCTTGGACTACAAGGGGCGACAGGAGATCTTCCTGCACCGTCAC
AGTCCCCTGTCCATCTACGCCGCCTGCCTCTCCTTCTTCTTCCTGGTGGCCTGCAGCGGG
GCCACTGCAGCCCTCCTGCGGGAAAAAATCAAGGCCAGACTGAGCAAGAAGGATTCCTGA
GGCCAGAGGGTGGGGCGAGGTGTGGAGGCAAATAGGAGTTGACTTTTCGTTTTTAAAAGC
AGGCTTTTAAATAGGTACATATTTCCAAGGATGGCTATGGCTCGCGAAGAGTTTTATTGT
TATGGTTGTTAATGAAAGGAGCATTCCTTTTCCTTCGGGGCCATAGCCTTCCCAGACAGG
AAGGGAAGGGACCTTGGCAAAGATTCAGCAGACACTAAATTAAGAACCATCTACATGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTCCTGCGGGAAGCCGGGATCCTGGGCTGGGAGTGCGGGCTGACTCTGCGGGTTGT
ATCCCTGTGCAGCCATGACAACCGCCATCCTGCAGCGCCTAAGCACCCTGTCGGTGAGCG
GGCAGCATCTGCGCCGCCTGCCCAAGATCCTGGAGGACGGGCTGCCCAAGATGCCTGGCA
CTGTGCCCGAGACCGACGTGCCCCAGCTCTTCCGGGAGCCTTACATCCGCGCCGGGTACC
GCCCCATCGGCCACGAGTGGCGTTACTACTTCTTCAGCCTCTTTCAGAAACACAACGAGG
TGGTCAACGTGTGGACCCACCTGCTGGCGGCCCTGGCCGTCCTCCTGCGGTTCTGGGCCT
TCGTGGAGACCGAGGGCCTGCCCTGGACCTCTGCTCACACCCTGCCCCTGCTCCTCTACG
TCCTGTCCTCCATCACTTACCTCACCTTCAGCCTGCTGGCCCACCTGCTGCAGTCCAAGT
CCGAGCTCTCCCACTACACCTTCTACTTCGTGGACTACGTGGGTGTGAGCGTGTACCAGT
ACGGCAGCGCCCTGGTCCACTTCTTCTACGCCTCCGACCAGGCCTGGTACGAGCGCTTCT
GGCTCTTCTTCCCTGCCCGCGGCCGCCTTCTGCGGCTGGTTATCTTGCACCGGCTGCTGC
TACGCCAAGTACCGTTACCGCCGGCCCTACCCGGTCATGAGGAAGGTCTGCCAAGTGGTG
CCCGCGGGGCTGGCCTTCATCCTGGACATCAGCCCCGTGGCGCACCGCGTGGCCCTGTGC
CACCTGTCTGGCTGCCAGGAGCAGGCCGCGTGGTACCACACCCTCCAGATCGTCTTCTTT
CTGGTCAGCGCCTACTTCTTCTCCTGCCCAGTTCCGGAGAAGTACTTTCCCGGTTCCTGT
GACATCGTGGGCCACGGCCATCAGATCTTCCACGCCTTTCTGTCCATCTGCACACTCTCT
CAGCTGGAGGCCATCCTCTTGGACTACAAGGGGCGACAGGAGATCTTCCTGCACCGTCAC
AGTCCCCTGTCCATCTACGCCGCCTGCCTCTCCTTCTTCTTCCTGGTGGCCTGCAGCGGG
GCCACTGCAGCCCTCCTGCGGGAAAAAATCAAGGCCAGACTGAGCAAGAAGGATTCCTGA
GGCCAGAGGGTGGGGCGAGGTGTGGAGGCAAATAGGAGTTGACTTTTCGTTTTTAAAAGC
AGGCTTTTAAATAGGTACATATTTCCAAGGATGGCTATGGCTCGCGAAGAGTTTTATTGT
TATGGTTGTTAATGAAAGGAGCATTCCTTTTCCTTCGGGGCCATAGCCTTCCCAGACAGG
AAGGGAAGGGACCTTGGCAAAGATTCAGCAGACACTAAATTAAGAACCATCTACATGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523352|ref|NP_998905.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523352|ref|NP_998905.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               536-655, - strand, RNAz p=0.513646
               

               
               696-895, - strand, RNAz p=0.654458
               

               
               936-1135, - strand, RNAz p=0.782645

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               536-655, - strand, RNAz p=0.513646
               

               
               696-895, - strand, RNAz p=0.654458
               

               
               936-1135, - strand, RNAz p=0.782645

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-1170, gnl|bosTau2|chr23 (22312978-22314097)
               

               
               50-1170, gnl|Hg17|chr6 (52375913-52377065)
               

               
               50-1170, gnl|Mm7|chr1 (21130174-21131317)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-1170, gnl|bosTau2|chr23 (22312978-22314097)
               

               
               50-1170, gnl|Hg17|chr6 (52375913-52377065)
               

               
               50-1170, gnl|Mm7|chr1 (21130174-21131317)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	536-655, - strand, RNAz p=0.513646
	696-895, - strand, RNAz p=0.654458
	936-1135, - strand, RNAz p=0.782645

	50-1170, gnl\|bosTau2\|chr23 (22312978-22314097)
	50-1170, gnl\|Hg17\|chr6 (52375913-52377065)
	50-1170, gnl\|Mm7\|chr1 (21130174-21131317)