Non-Coding RNA Search

Ss1.1-Mixn-0022p17.5

Sequence:


               
               CCCCATCCCTTCCTCAGTTACCAGTGCCTTAAGCCTTCAAGGCTTGAGAGGTGCTGGGAA
AGGGAGAGTTCTTCTGGGGACACAAGCTTTAGGTTTCATCCATTTCTTCCCTCTGCCTCC
ACATAGGACCACAGAGGTTTTTAATCCAATTAAGAGTCAGTAAGGCCAAGGGTCCCAGTA
AGCAAACCTCAGTTCCTCCTCAGCGCATGGCTGATGTAGGGGAAACAACTCAGGTGTCCA
GGCTAATGGAACAGTGGATTTTGGGGTAGAGAAAGTGATCCTGGGTTCTCACCCCATCAT
ATCTCCTGCTACCTCTTGCTCTCTTGTCTGGTTGATCACTCAGGTTACACCTGGGGTTGG
AGATGGTGGGCTAGGTCAAGGCCAGTCATTAAAAAAGGGGGGGTACCTAAAGACTACAAA
TGGGCAAATACTGAAATGTTTTTTGTGGATTTTAGAAACCACACATTGATAAGCTTAATG
TTGATTTTTCTGGCACAATTCTGGATTATTAAAAGAGATGGTTTATGAGCATTTAGACAA
ATGTTATCATAAATACCAACATGAGTTTGTCCTAGCCAAATCCCGACAAGCTAACTTTAT
TATTATTATTTATTTATTTTTGCCAAGTATCTCTAAAGAGGTACATTTGGGAAACTGTAG
ACATTGTCTGTACTGTATTAACATGCTCCAGCTGAAGACCACCAGAAATATACTTGCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCATCCCTTCCTCAGTTACCAGTGCCTTAAGCCTTCAAGGCTTGAGAGGTGCTGGGAA
AGGGAGAGTTCTTCTGGGGACACAAGCTTTAGGTTTCATCCATTTCTTCCCTCTGCCTCC
ACATAGGACCACAGAGGTTTTTAATCCAATTAAGAGTCAGTAAGGCCAAGGGTCCCAGTA
AGCAAACCTCAGTTCCTCCTCAGCGCATGGCTGATGTAGGGGAAACAACTCAGGTGTCCA
GGCTAATGGAACAGTGGATTTTGGGGTAGAGAAAGTGATCCTGGGTTCTCACCCCATCAT
ATCTCCTGCTACCTCTTGCTCTCTTGTCTGGTTGATCACTCAGGTTACACCTGGGGTTGG
AGATGGTGGGCTAGGTCAAGGCCAGTCATTAAAAAAGGGGGGGTACCTAAAGACTACAAA
TGGGCAAATACTGAAATGTTTTTTGTGGATTTTAGAAACCACACATTGATAAGCTTAATG
TTGATTTTTCTGGCACAATTCTGGATTATTAAAAGAGATGGTTTATGAGCATTTAGACAA
ATGTTATCATAAATACCAACATGAGTTTGTCCTAGCCAAATCCCGACAAGCTAACTTTAT
TATTATTATTTATTTATTTTTGCCAAGTATCTCTAAAGAGGTACATTTGGGAAACTGTAG
ACATTGTCTGTACTGTATTAACATGCTCCAGCTGAAGACCACCAGAAATATACTTGCAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-120, + strand, RNAz p=0.996172

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.996172

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-720, gnl|bosTau2|chr5 (33493673-33492964)
               

               
               1-720, gnl|Hg17|chr12 (54803007-54803972)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr5 (33493673-33492964)
               

               
               1-720, gnl|Hg17|chr12 (54803007-54803972)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.29274)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nbm (0.0993246)

	1-720, gnl\|bosTau2\|chr5 (33493673-33492964)
	1-720, gnl\|Hg17\|chr12 (54803007-54803972)