Ss1.1-Mixn-0023a18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAACCTGCAAATAGTCGTCTACCTCCTCACCTTATTGCACTTGACTCCACGATACCTG GATTTTTTGATGACATGGGGTATCTGGATCTCTTGCCATGTCGTCCCTTCGACACTGTTT TTATTTTCTATATGAAGCCAGGTCAGAAAACAAACCAAGAGATTTTAAAGAATGTGGAGT CTTCCAGAAATGTTCAGCCACATTTCCTAGAATTTTTGCTCTCTCTTGGCTGGTCAGTAG ATGTGGGCAAACACCCTGGTTGGACTGGGCATGTTTCCACCAGTTGGTCTATTAACAGTT GCGATGATGGCGAAGGACCTGAACAAGATGAAGTGATTTCTTCTGAAGATATTGGGGCCA GCATTTTCAATGGACAGAAGAAGGTGCTGTATTATGCTGATGCCCTAACAGAAATAGCTT TCGTGGTTCCTTCTCCTGTGGAGTCCTTAACCGATTCATTGGAAAGTAACGTCTCAGATC AAGATAGTGATTCAAATATGGATCTTATGCCAGGAATTCTGAAACAGCCTTCCCTGACAC TTGAGCTTTTCCCTAATCACACAGACAATCTTAATTCCTCACAGAGGCTCAGTCCCAGTT CCAGAATGAAGAAGCTGCCTCAGGGTCGCCCTGTGCCTCCCCTCGGACCTGAGACAAGAG TTTCTGTAGTCTGGGTGGAACGCTATGATGATATAGAAAACTTTCCTCTCGCAGACCTGA TGACGGAAATCAGTACGGGTGTGGAAACTACTGCAAATAGTAGTACTTCTCTGAGATCTA CTACTCTTGAAAAAGAAGTTCCTGTCATTTTCATCCACCCTTTAAACACTGGATTATTCC GGATAAAAATTCAAGGAGCCACTGGAAAATTTAACATGGTCATCCCTCTTGTGGATGGAA TGATTGTCAGTAGGCGAGCACTTGGTTTTCTGGTGAGGCAGACTGTAATTAACATTTGTA GAAGAAAGAGACTGGAAAGTGACTCCTACAGTCCACCACATGTCCGCCGGAAACAGAAAA TCACCGACATTGTCAACAAGTACCGGAACAAGCAGTTGGAGCCAGAATTTTATACGTCAC TTTTTCAGGAGGTTGGACTCAAGAACTGCAGTTCTTAGACCACTGTCTGTCTGGGACTAT TGAACTCCAGTTTGGGGCTATAATATCAGAGCAAAACAACTTGATAGGTGATCACTGTAA AAATAAAATAAATCACTCCCCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAACCTGCAAATAGTCGTCTACCTCCTCACCTTATTGCACTTGACTCCACGATACCTG GATTTTTTGATGACATGGGGTATCTGGATCTCTTGCCATGTCGTCCCTTCGACACTGTTT TTATTTTCTATATGAAGCCAGGTCAGAAAACAAACCAAGAGATTTTAAAGAATGTGGAGT CTTCCAGAAATGTTCAGCCACATTTCCTAGAATTTTTGCTCTCTCTTGGCTGGTCAGTAG ATGTGGGCAAACACCCTGGTTGGACTGGGCATGTTTCCACCAGTTGGTCTATTAACAGTT GCGATGATGGCGAAGGACCTGAACAAGATGAAGTGATTTCTTCTGAAGATATTGGGGCCA GCATTTTCAATGGACAGAAGAAGGTGCTGTATTATGCTGATGCCCTAACAGAAATAGCTT TCGTGGTTCCTTCTCCTGTGGAGTCCTTAACCGATTCATTGGAAAGTAACGTCTCAGATC AAGATAGTGATTCAAATATGGATCTTATGCCAGGAATTCTGAAACAGCCTTCCCTGACAC TTGAGCTTTTCCCTAATCACACAGACAATCTTAATTCCTCACAGAGGCTCAGTCCCAGTT CCAGAATGAAGAAGCTGCCTCAGGGTCGCCCTGTGCCTCCCCTCGGACCTGAGACAAGAG TTTCTGTAGTCTGGGTGGAACGCTATGATGATATAGAAAACTTTCCTCTCGCAGACCTGA TGACGGAAATCAGTACGGGTGTGGAAACTACTGCAAATAGTAGTACTTCTCTGAGATCTA CTACTCTTGAAAAAGAAGTTCCTGTCATTTTCATCCACCCTTTAAACACTGGATTATTCC GGATAAAAATTCAAGGAGCCACTGGAAAATTTAACATGGTCATCCCTCTTGTGGATGGAA TGATTGTCAGTAGGCGAGCACTTGGTTTTCTGGTGAGGCAGACTGTAATTAACATTTGTA GAAGAAAGAGACTGGAAAGTGACTCCTACAGTCCACCACATGTCCGCCGGAAACAGAAAA TCACCGACATTGTCAACAAGTACCGGAACAAGCAGTTGGAGCCAGAATTTTATACGTCAC TTTTTCAGGAGGTTGGACTCAAGAACTGCAGTTCTTAGACCACTGTCTGTCTGGGACTAT TGAACTCCAGTTTGGGGCTATAATATCAGAGCAAAACAACTTGATAGGTGATCACTGTAA AAATAAAATAAATCACTCCCCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 924-1042, - strand, RNAz p=0.824515 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 924-1042, - strand, RNAz p=0.824515 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 160-332, gnl|bosTau2|chr13 (49679149-49679321) | |
| 160-332, gnl|canFam2|chr24 (29985759-29985973) | |
| 160-332, gnl|danRer3|chr17 (11205253-11205033) | |
| 160-332, gnl|dasNov1|scaffold_946 (58264-58478) | |
| 160-332, gnl|fr1|chrUn (192458237-192458413) | |
| 160-332, gnl|galGal2|chr20 (660067-659867) | |
| 160-332, gnl|hg17|chr20 (36624556-36624773) | |
| 160-332, gnl|Hg17|chr20 (36624587-36624759) | |
| 160-332, gnl|loxAfr1|scaffold_33098 (18611-18401) | |
| 160-332, gnl|mm7|chr2 (158216965-158217176) | |
| 160-332, gnl|Mm7|chr2 (158216993-158217165) | |
| 160-332, gnl|monDom2|scaffold_6 (2690889-2690668) | |
| 160-332, gnl|oryCun1|scaffold_148410 (8397-8613) | |
| 160-332, gnl|panTro1|chr21 (39003579-39003796) | |
| 160-332, gnl|rheMac2|chr10 (25885402-25885185) | |
| 160-332, gnl|rn3|chr3 (149099952-149100163) | |
| 160-332, gnl|tetNig1|chrUn_random (27602938-27602763) | |
| 160-332, gnl|xenTro1|scaffold_35 (2397452-2397623) | |
| 448-594, gnl|bosTau2|chr13 (49683269-49683415) | |
| 448-594, gnl|canFam2|chr24 (29990259-29990418) | |
| 448-594, gnl|echTel1|scaffold_297644 (42712-42871) | |
| 448-594, gnl|fr1|chrUn (192458822-192458983) | |
| 448-594, gnl|galGal2|chr20 (656742-656583) | |
| 448-594, gnl|hg17|chr20 (36629136-36629295) | |
| 448-594, gnl|Hg17|chr20 (36629150-36629296) | |
| 448-594, gnl|loxAfr1|scaffold_33098 (15256-15093) | |
| 448-594, gnl|mm7|chr2 (158223238-158223397) | |
| 448-594, gnl|Mm7|chr2 (158223252-158223398) | |
| 448-594, gnl|monDom2|scaffold_6 (2687251-2687092) | |
| 448-594, gnl|oryCun1|scaffold_146356 (14775-14616) | |
| 448-594, gnl|panTro1|chr21 (39008249-39008408) | |
| 448-594, gnl|rheMac2|chr10 (25880875-25880716) | |
| 448-594, gnl|rn3|chr3 (149107995-149108154) | |
| 448-594, gnl|xenTro1|scaffold_35 (2397939-2398090) | |
| 924-1207, gnl|bosTau2|chr13 (49689217-49689500) | |
| 924-1207, gnl|canFam2|chr24 (29998631-29998855) | |
| 924-1207, gnl|dasNov1|scaffold_946 (71920-72144) | |
| 924-1207, gnl|echTel1|scaffold_297644 (52574-52783) | |
| 924-1207, gnl|fr1|chrUn (192460311-192460527) | |
| 924-1207, gnl|galGal2|chr20 (650466-650242) | |
| 924-1207, gnl|hg17|chr20 (36636804-36637028) | |
| 924-1207, gnl|Hg17|chr20 (36636830-36637117) | |
| 924-1207, gnl|loxAfr1|scaffold_57867 (29457-29239) | |
| 924-1207, gnl|mm7|chr2 (158236317-158236538) | |
| 924-1207, gnl|Mm7|chr2 (158236340-158236614) | |
| 924-1207, gnl|monDom2|scaffold_6 (2681591-2681363) | |
| 924-1207, gnl|oryCun1|scaffold_146356 (9105-8880) | |
| 924-1207, gnl|panTro1|chr21 (39015926-39016150) | |
| 924-1207, gnl|rheMac2|chr10 (25872934-25872710) | |
| 924-1207, gnl|rn3|chr3 (149117499-149117719) | |
| 924-1207, gnl|tetNig1|chrUn_random (27600864-27600674) | |
| 924-1207, gnl|xenTro1|scaffold_35 (2399546-2399747) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 160-332, gnl|bosTau2|chr13 (49679149-49679321) | |
| 160-332, gnl|canFam2|chr24 (29985759-29985973) | |
| 160-332, gnl|danRer3|chr17 (11205253-11205033) | |
| 160-332, gnl|dasNov1|scaffold_946 (58264-58478) | |
| 160-332, gnl|fr1|chrUn (192458237-192458413) | |
| 160-332, gnl|galGal2|chr20 (660067-659867) | |
| 160-332, gnl|hg17|chr20 (36624556-36624773) | |
| 160-332, gnl|Hg17|chr20 (36624587-36624759) | |
| 160-332, gnl|loxAfr1|scaffold_33098 (18611-18401) | |
| 160-332, gnl|mm7|chr2 (158216965-158217176) | |
| 160-332, gnl|Mm7|chr2 (158216993-158217165) | |
| 160-332, gnl|monDom2|scaffold_6 (2690889-2690668) | |
| 160-332, gnl|oryCun1|scaffold_148410 (8397-8613) | |
| 160-332, gnl|panTro1|chr21 (39003579-39003796) | |
| 160-332, gnl|rheMac2|chr10 (25885402-25885185) | |
| 160-332, gnl|rn3|chr3 (149099952-149100163) | |
| 160-332, gnl|tetNig1|chrUn_random (27602938-27602763) | |
| 160-332, gnl|xenTro1|scaffold_35 (2397452-2397623) | |
| 448-594, gnl|bosTau2|chr13 (49683269-49683415) | |
| 448-594, gnl|canFam2|chr24 (29990259-29990418) | |
| 448-594, gnl|echTel1|scaffold_297644 (42712-42871) | |
| 448-594, gnl|fr1|chrUn (192458822-192458983) | |
| 448-594, gnl|galGal2|chr20 (656742-656583) | |
| 448-594, gnl|hg17|chr20 (36629136-36629295) | |
| 448-594, gnl|Hg17|chr20 (36629150-36629296) | |
| 448-594, gnl|loxAfr1|scaffold_33098 (15256-15093) | |
| 448-594, gnl|mm7|chr2 (158223238-158223397) | |
| 448-594, gnl|Mm7|chr2 (158223252-158223398) | |
| 448-594, gnl|monDom2|scaffold_6 (2687251-2687092) | |
| 448-594, gnl|oryCun1|scaffold_146356 (14775-14616) | |
| 448-594, gnl|panTro1|chr21 (39008249-39008408) | |
| 448-594, gnl|rheMac2|chr10 (25880875-25880716) | |
| 448-594, gnl|rn3|chr3 (149107995-149108154) | |
| 448-594, gnl|xenTro1|scaffold_35 (2397939-2398090) | |
| 924-1207, gnl|bosTau2|chr13 (49689217-49689500) | |
| 924-1207, gnl|canFam2|chr24 (29998631-29998855) | |
| 924-1207, gnl|dasNov1|scaffold_946 (71920-72144) | |
| 924-1207, gnl|echTel1|scaffold_297644 (52574-52783) | |
| 924-1207, gnl|fr1|chrUn (192460311-192460527) | |
| 924-1207, gnl|galGal2|chr20 (650466-650242) | |
| 924-1207, gnl|hg17|chr20 (36636804-36637028) | |
| 924-1207, gnl|Hg17|chr20 (36636830-36637117) | |
| 924-1207, gnl|loxAfr1|scaffold_57867 (29457-29239) | |
| 924-1207, gnl|mm7|chr2 (158236317-158236538) | |
| 924-1207, gnl|Mm7|chr2 (158236340-158236614) | |
| 924-1207, gnl|monDom2|scaffold_6 (2681591-2681363) | |
| 924-1207, gnl|oryCun1|scaffold_146356 (9105-8880) | |
| 924-1207, gnl|panTro1|chr21 (39015926-39016150) | |
| 924-1207, gnl|rheMac2|chr10 (25872934-25872710) | |
| 924-1207, gnl|rn3|chr3 (149117499-149117719) | |
| 924-1207, gnl|tetNig1|chrUn_random (27600864-27600674) | |
| 924-1207, gnl|xenTro1|scaffold_35 (2399546-2399747) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cte (0.29274) | |
| fce (0.271592) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| sug (0.127291) | |
| tra (0.123092) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| fce (0.271592) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| sug (0.127291) | |
| tra (0.123092) |