Ss1.1-Mixn-0023b06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAGCGTCATAATGAGGCCCTGAACGGTTTACGCCAGGCTCCTTCCGCCTACCCTCCCG CCTGGCATCCTGGCCCTGCCCACCACAGCTGCCACCAGCCCAACAGCAATGGGCACCGTC TATGCCCCACCCACGTGTACCCAGCCCCAGAAGGCGAAGCACCCGCCAACAGTCTGCGTC AGGGCAACTCCAAGAACGTTCTGCTGGCATGTCCCATGAACATGTACCCGCACGGACGCA GTGGGCGAACCGTGCAAGAGATCTGGGAGGATTTCTCCATGAGCTTCACACCTGCCGTGC GGGAGGTGGTGGAGTTTGCCAAGCACATCCCCGGCTTCCGTGATCTTTCTCAGCACGACC AGGTCACCCTGCTCAAGGCTGGCACCTTTGAGGTGCTGATGGTGCGCTTTGCGTCGCTGT TCAACGTGAAGGACCAGACGGTGATGTTCCTGAGCCGCACCACCTACAGCCTGCAGGAGC TCGGCGCCATGGGCATGGGCGACCTGCTCAATGCCATGTTCGACTTCAGCGAGAAGCTCA ACTCCCTGGCGCTTACCGAGGAGGAGCTGGGCCTCTTCACCGCGGTGGTGCTCGTCTCGG CAGACCGCTCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAGCGTCATAATGAGGCCCTGAACGGTTTACGCCAGGCTCCTTCCGCCTACCCTCCCG CCTGGCATCCTGGCCCTGCCCACCACAGCTGCCACCAGCCCAACAGCAATGGGCACCGTC TATGCCCCACCCACGTGTACCCAGCCCCAGAAGGCGAAGCACCCGCCAACAGTCTGCGTC AGGGCAACTCCAAGAACGTTCTGCTGGCATGTCCCATGAACATGTACCCGCACGGACGCA GTGGGCGAACCGTGCAAGAGATCTGGGAGGATTTCTCCATGAGCTTCACACCTGCCGTGC GGGAGGTGGTGGAGTTTGCCAAGCACATCCCCGGCTTCCGTGATCTTTCTCAGCACGACC AGGTCACCCTGCTCAAGGCTGGCACCTTTGAGGTGCTGATGGTGCGCTTTGCGTCGCTGT TCAACGTGAAGGACCAGACGGTGATGTTCCTGAGCCGCACCACCTACAGCCTGCAGGAGC TCGGCGCCATGGGCATGGGCGACCTGCTCAATGCCATGTTCGACTTCAGCGAGAAGCTCA ACTCCCTGGCGCTTACCGAGGAGGAGCTGGGCCTCTTCACCGCGGTGGTGCTCGTCTCGG CAGACCGCTCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-159, - strand, RNAz p=0.95658 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-159, - strand, RNAz p=0.95658 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-207, gnl|bosTau2|chr19 (34508151-34508357) | |
| 1-207, gnl|Hg17|chr17 (35505428-35505222) | |
| 1-207, gnl|Mm7|chr11 (98879432-98879226) | |
| 388-603, gnl|bosTau2|chr19 (34509317-34509532) | |
| 388-603, gnl|canFam2|chr23 (22812558-22812417) | |
| 388-603, gnl|canFam2|chr9 (25796104-25795886) | |
| 388-603, gnl|danRer3|chr23 (35862167-35862026) | |
| 388-603, gnl|danRer3|chr3 (16375440-16375658) | |
| 388-603, gnl|dasNov1|scaffold_3475 (89146-89364) | |
| 388-603, gnl|dasNov1|scaffold_89860 (8-148) | |
| 388-603, gnl|echTel1|scaffold_208460 (2998-2780) | |
| 388-603, gnl|echTel1|scaffold_243847 (3193-3039) | |
| 388-603, gnl|fr1|chrUn (197674547-197674329) | |
| 388-603, gnl|fr1|chrUn (197674323-197674462) | |
| 388-603, gnl|galGal2|chr2 (36330615-36330756) | |
| 388-603, gnl|hg17|chr17 (35503686-35503904) | |
| 388-603, gnl|Hg17|chr17 (35503911-35503691) | |
| 388-603, gnl|hg17|chr3 (23984299-23984440) | |
| 388-603, gnl|loxAfr1|scaffold_49063 (13738-13520) | |
| 388-603, gnl|loxAfr1|scaffold_49063 (13517-13653) | |
| 388-603, gnl|mm7|chr11 (98878083-98878301) | |
| 388-603, gnl|Mm7|chr11 (98878303-98878088) | |
| 388-603, gnl|mm7|chr14 (16022369-16022228) | |
| 388-603, gnl|monDom2|scaffold_18 (49318900-49319118) | |
| 388-603, gnl|monDom2|scaffold_7 (79766053-79766194) | |
| 388-603, gnl|oryCun1|scaffold_183318 (20214-19996) | |
| 388-603, gnl|oryCun1|scaffold_190713 (45556-45415) | |
| 388-603, gnl|panTro1|chr19 (38742894-38743112) | |
| 388-603, gnl|panTro1|chr2 (24920700-24920841) | |
| 388-603, gnl|rheMac2|chr16 (50198679-50198897) | |
| 388-603, gnl|rheMac2|chr2 (166428942-166429083) | |
| 388-603, gnl|rn3|chr10 (87556714-87556932) | |
| 388-603, gnl|rn3|chr10 (87556940-87556799) | |
| 388-603, gnl|tetNig1|chrUn_random (134828056-134828274) | |
| 388-603, gnl|tetNig1|chrUn_random (134828280-134828141) | |
| 388-603, gnl|xenTro1|scaffold_43 (1447514-1447655) | |
| 388-603, gnl|xenTro1|scaffold_670 (421304-421086) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-207, gnl|bosTau2|chr19 (34508151-34508357) | |
| 1-207, gnl|Hg17|chr17 (35505428-35505222) | |
| 1-207, gnl|Mm7|chr11 (98879432-98879226) | |
| 388-603, gnl|bosTau2|chr19 (34509317-34509532) | |
| 388-603, gnl|canFam2|chr23 (22812558-22812417) | |
| 388-603, gnl|canFam2|chr9 (25796104-25795886) | |
| 388-603, gnl|danRer3|chr23 (35862167-35862026) | |
| 388-603, gnl|danRer3|chr3 (16375440-16375658) | |
| 388-603, gnl|dasNov1|scaffold_3475 (89146-89364) | |
| 388-603, gnl|dasNov1|scaffold_89860 (8-148) | |
| 388-603, gnl|echTel1|scaffold_208460 (2998-2780) | |
| 388-603, gnl|echTel1|scaffold_243847 (3193-3039) | |
| 388-603, gnl|fr1|chrUn (197674547-197674329) | |
| 388-603, gnl|fr1|chrUn (197674323-197674462) | |
| 388-603, gnl|galGal2|chr2 (36330615-36330756) | |
| 388-603, gnl|hg17|chr17 (35503686-35503904) | |
| 388-603, gnl|Hg17|chr17 (35503911-35503691) | |
| 388-603, gnl|hg17|chr3 (23984299-23984440) | |
| 388-603, gnl|loxAfr1|scaffold_49063 (13738-13520) | |
| 388-603, gnl|loxAfr1|scaffold_49063 (13517-13653) | |
| 388-603, gnl|mm7|chr11 (98878083-98878301) | |
| 388-603, gnl|Mm7|chr11 (98878303-98878088) | |
| 388-603, gnl|mm7|chr14 (16022369-16022228) | |
| 388-603, gnl|monDom2|scaffold_18 (49318900-49319118) | |
| 388-603, gnl|monDom2|scaffold_7 (79766053-79766194) | |
| 388-603, gnl|oryCun1|scaffold_183318 (20214-19996) | |
| 388-603, gnl|oryCun1|scaffold_190713 (45556-45415) | |
| 388-603, gnl|panTro1|chr19 (38742894-38743112) | |
| 388-603, gnl|panTro1|chr2 (24920700-24920841) | |
| 388-603, gnl|rheMac2|chr16 (50198679-50198897) | |
| 388-603, gnl|rheMac2|chr2 (166428942-166429083) | |
| 388-603, gnl|rn3|chr10 (87556714-87556932) | |
| 388-603, gnl|rn3|chr10 (87556940-87556799) | |
| 388-603, gnl|tetNig1|chrUn_random (134828056-134828274) | |
| 388-603, gnl|tetNig1|chrUn_random (134828280-134828141) | |
| 388-603, gnl|xenTro1|scaffold_43 (1447514-1447655) | |
| 388-603, gnl|xenTro1|scaffold_670 (421304-421086) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| cly (0.120642) |