Non-Coding RNA Search

Ss1.1-Mixn-0023d03.5

Sequence:


               
               GCTCAAGAGCCTGCTCAGTCTGCGAGCGGTCCCTCAGTAAGGCTTCCCTGTGGGGACCCG
ACGCGCACGCGCACACCTAGCCCCGCCCCTGCGCGCCGCCGCGTCTTCTGACCCAGGGCC
GCGCGCCACGGGCAGCGGAGGGCTGCATGCGGGACTACGACGAGATGACCGCCTTCCTGG
GCGAGTGGGGGCCCTTCCAGCGCCTCATCTTCTTCTTGCTCAGCGCCAGCATCATCCCCA
ACGGCTTCAACGGCCTGTCTGCCGTTTTCCTCACTGCGACCCCGGAGCACCGCTGCCGAG
TGCCAGACACCGCGAACCTGAGCAGCGCTTGGCGCAACCACAGTCTCCCGCTGCGGCTGC
AGGACGGCCGCGAGGTGCCTCACAGCTGCCGTCGCTACCGGCTCGAGACGATTGTCAACT
TCTCGGCTCTAGGGCTGGAGCCTGGGCGCGACGTGGACCTAGAGCAGGTGGAACAAGAGG
GCTGCCTGAATGGGTGGGAGTTCAGCCAGGACATCTACTTGTCCACCATCGTGACTGAGG
TTTGGCCGGAAGAATGTGCTGTTTGTAACGATGGGCATGCAGACAGGCTTCAGCTTCCTG
CAGGTCTTCTCGAAGAACTATGAGATGTTTGCTGTGCTATTTTTCCTTGTAGGCATGGGC
CAGATCTCCAACTATGTGGCAGCGTTTGTCCTGGGAACAGAAATTCTTGGCAAGTCCGTT
CGTATTATATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAAGAGCCTGCTCAGTCTGCGAGCGGTCCCTCAGTAAGGCTTCCCTGTGGGGACCCG
ACGCGCACGCGCACACCTAGCCCCGCCCCTGCGCGCCGCCGCGTCTTCTGACCCAGGGCC
GCGCGCCACGGGCAGCGGAGGGCTGCATGCGGGACTACGACGAGATGACCGCCTTCCTGG
GCGAGTGGGGGCCCTTCCAGCGCCTCATCTTCTTCTTGCTCAGCGCCAGCATCATCCCCA
ACGGCTTCAACGGCCTGTCTGCCGTTTTCCTCACTGCGACCCCGGAGCACCGCTGCCGAG
TGCCAGACACCGCGAACCTGAGCAGCGCTTGGCGCAACCACAGTCTCCCGCTGCGGCTGC
AGGACGGCCGCGAGGTGCCTCACAGCTGCCGTCGCTACCGGCTCGAGACGATTGTCAACT
TCTCGGCTCTAGGGCTGGAGCCTGGGCGCGACGTGGACCTAGAGCAGGTGGAACAAGAGG
GCTGCCTGAATGGGTGGGAGTTCAGCCAGGACATCTACTTGTCCACCATCGTGACTGAGG
TTTGGCCGGAAGAATGTGCTGTTTGTAACGATGGGCATGCAGACAGGCTTCAGCTTCCTG
CAGGTCTTCTCGAAGAACTATGAGATGTTTGCTGTGCTATTTTTCCTTGTAGGCATGGGC
CAGATCTCCAACTATGTGGCAGCGTTTGTCCTGGGAACAGAAATTCTTGGCAAGTCCGTT
CGTATTATATTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               423-541, + strand, RNAz p=0.634834

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               423-541, + strand, RNAz p=0.634834

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               125-541, gnl|bosTau2|chr7 (20887026-20887444)
               

               
               125-541, gnl|Hg17|chr5 (131658182-131658603)
               

               
               125-541, gnl|Mm7|chr11 (53984759-53984339)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-541, gnl|bosTau2|chr7 (20887026-20887444)
               

               
               125-541, gnl|Hg17|chr5 (131658182-131658603)
               

               
               125-541, gnl|Mm7|chr11 (53984759-53984339)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	125-541, gnl\|bosTau2\|chr7 (20887026-20887444)
	125-541, gnl\|Hg17\|chr5 (131658182-131658603)
	125-541, gnl\|Mm7\|chr11 (53984759-53984339)