Ss1.1-Mixn-0023e15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGATGCCCCTGCCTTCTTTGAATTGGCCAAGAAGATGTCCAGCCGGGTGCCTTTGGAGC CAGGCTTCAACTACTGCAGAGGCATCTACTGCTGGCACATAGGGCAGCCCAACGAAGCCT TGAAGTTCCTAAACAAAGCGCGCAAGGACAACACTTGGGGCCAGAGCGCTACCTACTGCA TGGTGCAGATCTGTCTGAACCCAGACAACGAGATTGTGGGCGGAGAGGCTTTTGAGAGCC TGGTGCCTGAGAGCAATTCCTTGGAGAGAAAGGAGTCAGAGCGGCACGGCGTGCGCACCG CGGAGAAGCTGCTGCGGGAGTTCTACCCGCAGTCGGCCTCGGGCCAGACCCAGCTGCGGC TGCTGCAGAGCCTATGCCTGCTGGCCACCCGGGAGAAGGCTAATGTGGAGGCTGCGCTGG GCACCTTCATCGATATGGCCCAGGCTGAGAAGGACAGCGTCCCCGCCCTGCTGGCCATGG CGCAGGCCTACTCGCTGCTGAAGCAGGTCCCCAAGGCGCGAACACAGTTGAAGCGCCTGG CCAAGGCCCCGTGGGCGTTGGCTGAGGCCGACGACCTGGAGAAGAGCTGGCTCTTGTTGG CTGACATCTACTGCCAAGGTGGCAAGTTCGACCTAGCCTCGGAGCTGCTGCGGCGCTGCG TGCAGTACAACAAGTCCTGCTGCAAGGCCTACGAATACATGGGCTTCATCATGGAGAGGG AACAGTCCTACAAGGATGCAGCCACCAACTATGAACTGGCCTGGAAGTACAGTCATCATG CCAACCCTGCCATCGGCTTCAAACTTGCTTTCAACTACTTGAAGGACAAGAGATTCGTGG AGGCCATCGAAGTCTGCCACAGCGTCCTCAGAGAGCACCCCAGCTACCCCAAAATCAGAG AAGAAATTTTGAAAAAGGCCCAAGGTTCTCTGAGGCCCTAGCCATGGTCAGTGGGAGCCA GGGCAAGTGGAAGCTGTCAACCTACAGAAGTTTCATGGCGGGGGTGGGAACTGGGTCAGC GGAGAAGAGATTCAGAAAATAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGATGCCCCTGCCTTCTTTGAATTGGCCAAGAAGATGTCCAGCCGGGTGCCTTTGGAGC CAGGCTTCAACTACTGCAGAGGCATCTACTGCTGGCACATAGGGCAGCCCAACGAAGCCT TGAAGTTCCTAAACAAAGCGCGCAAGGACAACACTTGGGGCCAGAGCGCTACCTACTGCA TGGTGCAGATCTGTCTGAACCCAGACAACGAGATTGTGGGCGGAGAGGCTTTTGAGAGCC TGGTGCCTGAGAGCAATTCCTTGGAGAGAAAGGAGTCAGAGCGGCACGGCGTGCGCACCG CGGAGAAGCTGCTGCGGGAGTTCTACCCGCAGTCGGCCTCGGGCCAGACCCAGCTGCGGC TGCTGCAGAGCCTATGCCTGCTGGCCACCCGGGAGAAGGCTAATGTGGAGGCTGCGCTGG GCACCTTCATCGATATGGCCCAGGCTGAGAAGGACAGCGTCCCCGCCCTGCTGGCCATGG CGCAGGCCTACTCGCTGCTGAAGCAGGTCCCCAAGGCGCGAACACAGTTGAAGCGCCTGG CCAAGGCCCCGTGGGCGTTGGCTGAGGCCGACGACCTGGAGAAGAGCTGGCTCTTGTTGG CTGACATCTACTGCCAAGGTGGCAAGTTCGACCTAGCCTCGGAGCTGCTGCGGCGCTGCG TGCAGTACAACAAGTCCTGCTGCAAGGCCTACGAATACATGGGCTTCATCATGGAGAGGG AACAGTCCTACAAGGATGCAGCCACCAACTATGAACTGGCCTGGAAGTACAGTCATCATG CCAACCCTGCCATCGGCTTCAAACTTGCTTTCAACTACTTGAAGGACAAGAGATTCGTGG AGGCCATCGAAGTCTGCCACAGCGTCCTCAGAGAGCACCCCAGCTACCCCAAAATCAGAG AAGAAATTTTGAAAAAGGCCCAAGGTTCTCTGAGGCCCTAGCCATGGTCAGTGGGAGCCA GGGCAAGTGGAAGCTGTCAACCTACAGAAGTTTCATGGCGGGGGTGGGAACTGGGTCAGC GGAGAAGAGATTCAGAAAATAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 853-1005, - strand, RNAz p=0.94206 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 853-1005, - strand, RNAz p=0.94206 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 85-256, gnl|bosTau2|chr22 (9882564-9882735) | |
| 85-256, gnl|Hg17|chr3 (39153384-39153555) | |
| 85-256, gnl|Mm7|chr9 (119661898-119662069) | |
| 448-674, gnl|bosTau2|chr22 (9883145-9883371) | |
| 448-674, gnl|canFam2|chr36 (14033924-14033759) | |
| 448-674, gnl|danRer3|chr24 (32885429-32885287) | |
| 448-674, gnl|dasNov1|scaffold_13097 (14511-14676) | |
| 448-674, gnl|echTel1|scaffold_309630 (41105-40921) | |
| 448-674, gnl|fr1|chrUn (6940118-6940297) | |
| 448-674, gnl|hg17|chr3 (39153958-39154142) | |
| 448-674, gnl|Hg17|chr3 (39153979-39154205) | |
| 448-674, gnl|loxAfr1|scaffold_62704 (1160-1325) | |
| 448-674, gnl|mm7|chr9 (119662426-119662611) | |
| 448-674, gnl|Mm7|chr9 (119662448-119662674) | |
| 448-674, gnl|monDom2|scaffold_128 (2774586-2774763) | |
| 448-674, gnl|oryCun1|scaffold_195389 (1058-874) | |
| 448-674, gnl|panTro1|chr2 (40264782-40264966) | |
| 448-674, gnl|rheMac2|chr2 (97383110-97382926) | |
| 448-674, gnl|rn3|chr8 (124948060-124948243) | |
| 448-674, gnl|tetNig1|chr2 (11763464-11763300) | |
| 448-674, gnl|xenTro1|scaffold_647 (554293-554126) | |
| 853-1042, gnl|bosTau2|chr22 (9884300-9884491) | |
| 853-1042, gnl|Hg17|chr3 (39155196-39155381) | |
| 853-1042, gnl|Mm7|chr9 (119663482-119663671) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-256, gnl|bosTau2|chr22 (9882564-9882735) | |
| 85-256, gnl|Hg17|chr3 (39153384-39153555) | |
| 85-256, gnl|Mm7|chr9 (119661898-119662069) | |
| 448-674, gnl|bosTau2|chr22 (9883145-9883371) | |
| 448-674, gnl|canFam2|chr36 (14033924-14033759) | |
| 448-674, gnl|danRer3|chr24 (32885429-32885287) | |
| 448-674, gnl|dasNov1|scaffold_13097 (14511-14676) | |
| 448-674, gnl|echTel1|scaffold_309630 (41105-40921) | |
| 448-674, gnl|fr1|chrUn (6940118-6940297) | |
| 448-674, gnl|hg17|chr3 (39153958-39154142) | |
| 448-674, gnl|Hg17|chr3 (39153979-39154205) | |
| 448-674, gnl|loxAfr1|scaffold_62704 (1160-1325) | |
| 448-674, gnl|mm7|chr9 (119662426-119662611) | |
| 448-674, gnl|Mm7|chr9 (119662448-119662674) | |
| 448-674, gnl|monDom2|scaffold_128 (2774586-2774763) | |
| 448-674, gnl|oryCun1|scaffold_195389 (1058-874) | |
| 448-674, gnl|panTro1|chr2 (40264782-40264966) | |
| 448-674, gnl|rheMac2|chr2 (97383110-97382926) | |
| 448-674, gnl|rn3|chr8 (124948060-124948243) | |
| 448-674, gnl|tetNig1|chr2 (11763464-11763300) | |
| 448-674, gnl|xenTro1|scaffold_647 (554293-554126) | |
| 853-1042, gnl|bosTau2|chr22 (9884300-9884491) | |
| 853-1042, gnl|Hg17|chr3 (39155196-39155381) | |
| 853-1042, gnl|Mm7|chr9 (119663482-119663671) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cmu (0.186393) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| spc (0.113366) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.186393) | |
| che (0.136314) | |
| cov (0.132153) | |
| eep (0.122564) | |
| spc (0.113366) |