Non-Coding RNA Search

Ss1.1-Mixn-0023e17.5

Sequence:


               
               GGATGACAGTGTTTTCATTGCTGTTAAAGAAATCGGTCGTGATCTGTACAGGGGCTTGCC
TACGGAGGAGAGGATCCAGAAACTAGAGTTCATGCTAGATAAACTGCAGAATGAAATTGA
TCAGGAGTTGGAACATAACAATTCCCTTGTTAGAGAAGAAAAAGAGACAACTGATTCGAG
GAAAAAATCAATTCTTTCTGCGGCTTTGGCTAAATCAGGTGAAAGACTGCAAGCTCTAAC
ACTTCTCATGATCCACTATAGAGCAGGCATTGAAGATGTCGAATCTTTAGAAAGTCTCTC
TCTAGATCAGCACTCCAAAAAAATAAGCAAGTATACAGATGATACAGAAGAAGACCTAGA
TAATGAAATAACCCAACTAATAGACTCTCAGCCATTCAGTAGCATACCAGATGACTTATT
TGGCCCTTCTGAGTCTGTTTAAGTCTGTTTAACCTTTCAAGTGATTAAGGAAAAGTTGTA
TCTCAAGTACCACAGGTACAACACATTGAAACCCTCTTATTATGCACTTTGGCCTGCTTC
TCCACAGTTATTTGCTTGTGTAAGAACTAGAGTGGACAAGGTTCTCCAGCAAAAACATGA
CCAGCTCCCTAAATTGGTTGTTTCAGATTGTATTTATAGCTATGCTTTTTGGGTTTTTAC
TGGGAATTTATTTTTACTAATTTATTTTTAACTTTTTCTAATTACGTAAGCTAACTTTTG
GTGTTTATGTGTGATGTCTTGTTATTTTTCCTTCCTCTTCCTAGTTTTTGAATTAGTGTT
AAATAGGATACCATCCAGATTCTTAATATTTTCATTTCCATCATGGTTATAAAAATAAAT
TTGCTGCATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGACAGTGTTTTCATTGCTGTTAAAGAAATCGGTCGTGATCTGTACAGGGGCTTGCC
TACGGAGGAGAGGATCCAGAAACTAGAGTTCATGCTAGATAAACTGCAGAATGAAATTGA
TCAGGAGTTGGAACATAACAATTCCCTTGTTAGAGAAGAAAAAGAGACAACTGATTCGAG
GAAAAAATCAATTCTTTCTGCGGCTTTGGCTAAATCAGGTGAAAGACTGCAAGCTCTAAC
ACTTCTCATGATCCACTATAGAGCAGGCATTGAAGATGTCGAATCTTTAGAAAGTCTCTC
TCTAGATCAGCACTCCAAAAAAATAAGCAAGTATACAGATGATACAGAAGAAGACCTAGA
TAATGAAATAACCCAACTAATAGACTCTCAGCCATTCAGTAGCATACCAGATGACTTATT
TGGCCCTTCTGAGTCTGTTTAAGTCTGTTTAACCTTTCAAGTGATTAAGGAAAAGTTGTA
TCTCAAGTACCACAGGTACAACACATTGAAACCCTCTTATTATGCACTTTGGCCTGCTTC
TCCACAGTTATTTGCTTGTGTAAGAACTAGAGTGGACAAGGTTCTCCAGCAAAAACATGA
CCAGCTCCCTAAATTGGTTGTTTCAGATTGTATTTATAGCTATGCTTTTTGGGTTTTTAC
TGGGAATTTATTTTTACTAATTTATTTTTAACTTTTTCTAATTACGTAAGCTAACTTTTG
GTGTTTATGTGTGATGTCTTGTTATTTTTCCTTCCTCTTCCTAGTTTTTGAATTAGTGTT
AAATAGGATACCATCCAGATTCTTAATATTTTCATTTCCATCATGGTTATAAAAATAAAT
TTGCTGCATGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29164891|gb|AAO65177.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29164891|gb|AAO65177.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-240, + strand, RNAz p=0.750089

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, + strand, RNAz p=0.750089

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr26 (26493342-26492464)
               

               
               1-852, gnl|Hg17|chr10 (119033210-119032344)
               

               
               1-852, gnl|Mm7|chr19 (59222184-59221316)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr26 (26493342-26492464)
               

               
               1-852, gnl|Hg17|chr10 (119033210-119032344)
               

               
               1-852, gnl|Mm7|chr19 (59222184-59221316)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               pgl (0.118483)

	1-852, gnl\|bosTau2\|chr26 (26493342-26492464)
	1-852, gnl\|Hg17\|chr10 (119033210-119032344)
	1-852, gnl\|Mm7\|chr19 (59222184-59221316)

	tes (0.207814)
	sag (0.182715)
	rec (0.17307)
	tbr (0.154178)
	pgl (0.118483)