Non-Coding RNA Search

Ss1.1-Mixn-0023e21.5

Sequence:


               
               GCAACAGCAGCAGCAACTCCTGGGAGGAAGGCAGCTCGGGCTCGTCCAGCGACGAGGAGC
ACGGTGGCGGCGGCATGCGGGTCGGACCCCAGTACCAGGCGGTGGTGCCCGACTTCGACC
CCGCCAAACTAGCAAGACGCAGTCAAGAACGAGACAATCTTGGCATGTTGGTCTGGTCGC
CTAATCAGAATCTATCAGAAGCAAAATTGGATGAGTACATTGCCATCGCTAAGGAGAAGC
ATGGGTACAACATGGAACAGGCTCTTGGGATGCTCTTTTGGCATAAGCATAATATTGAAA
AATCATTGGCTGATTTGCCCAACTTCACCCCCTTCCCAGATGAGTGGACTGTGGAAGATA
AAGTCTTGTTTGAGCAGGCCTTCAGTTTTCACGGGAAGACGTTCCATCGGATCCAGCAAA
TGCTTCCTGATAAGTCTATAGCAAGTCTGGTGAAATTTTACTACTCCTGGAAGAAGACGA
GGACTAAAACCAGCGTGATGGATCGCCACGCTCGCAAGCAGAAACGAGAGCGGGAGGAAA
GTGAGGATGAGCTAGAAGACCCAAACGGAACTAACCCAGTTGACGCTGAGATTGATCAAA
ACAAGGAAAGCAAGAAGGAGGTTCCCCCTACTGAGACAATTCCTCAGATCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACAGCAGCAGCAACTCCTGGGAGGAAGGCAGCTCGGGCTCGTCCAGCGACGAGGAGC
ACGGTGGCGGCGGCATGCGGGTCGGACCCCAGTACCAGGCGGTGGTGCCCGACTTCGACC
CCGCCAAACTAGCAAGACGCAGTCAAGAACGAGACAATCTTGGCATGTTGGTCTGGTCGC
CTAATCAGAATCTATCAGAAGCAAAATTGGATGAGTACATTGCCATCGCTAAGGAGAAGC
ATGGGTACAACATGGAACAGGCTCTTGGGATGCTCTTTTGGCATAAGCATAATATTGAAA
AATCATTGGCTGATTTGCCCAACTTCACCCCCTTCCCAGATGAGTGGACTGTGGAAGATA
AAGTCTTGTTTGAGCAGGCCTTCAGTTTTCACGGGAAGACGTTCCATCGGATCCAGCAAA
TGCTTCCTGATAAGTCTATAGCAAGTCTGGTGAAATTTTACTACTCCTGGAAGAAGACGA
GGACTAAAACCAGCGTGATGGATCGCCACGCTCGCAAGCAGAAACGAGAGCGGGAGGAAA
GTGAGGATGAGCTAGAAGACCCAAACGGAACTAACCCAGTTGACGCTGAGATTGATCAAA
ACAAGGAAAGCAAGAAGGAGGTTCCCCCTACTGAGACAATTCCTCAGATCAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6P2I9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P2I9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               305-422, + strand, RNAz p=0.514728

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-422, + strand, RNAz p=0.514728

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               259-422, gnl|bosTau2|chr16 (54936992-54937155)
               

               
               259-422, gnl|Hg17|chr1 (207837992-207838155)
               

               
               259-422, gnl|Mm7|chr1 (191679086-191678923)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               259-422, gnl|bosTau2|chr16 (54936992-54937155)
               

               
               259-422, gnl|Hg17|chr1 (207837992-207838155)
               

               
               259-422, gnl|Mm7|chr1 (191679086-191678923)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	259-422, gnl\|bosTau2\|chr16 (54936992-54937155)
	259-422, gnl\|Hg17\|chr1 (207837992-207838155)
	259-422, gnl\|Mm7\|chr1 (191679086-191678923)