Non-Coding RNA Search

Ss1.1-Mixn-0023g03.5

Sequence:


               
               CTGGAGTACCTGCACAGCCAGGGCATCGTGCACAAGGACATTAAGCCTGGCAACCTGCTG
CTCACCACAGGTGGCACACTCAAGATCTCTGACCTGGGTGTGGCTGAGGCCCTGCACCCC
TTTGCTGAGGATGACACCTGCCGAACGAGCCAGGGCTCCCCTGCGTTCCAGCCGCCTGAG
ATTGCCAATGGCCTGGACACCTTCTCTGGCTTCAAGGTGGACATCTGGTCGGCTGGGGTC
ACGCTCTACAACATCACAACAGGACTGTACCCGTTCGAGGGGGACAACATCTACAAGCTG
TTTGAGAACATCGGGAAGGGGGACTACAGCATCCCTGGGGACTGCGGACCCCCCCTCTCA
GACCTGCTGAGAGGAATGCTGGAATACGAGCCGGCCAAGAGGTTTTCCATACAGCAGATC
CGGCAGCACAGCTGGTTCCGGAAGAAGCACCCACCAGCTGAGGAGCCAGTGCCCATCCCA
CCAAGCACGGACTGCAAGGACCGGTGGCGCGGCATGACGGTGGTGCCGTACTTGGAAGAT
TTGCACGGCTGTGCAGATGACGTGGACGACGAGCTCTTCGACATCGAGGACGACATTATC
CACACACTCGCCCTCTCCCTCCTAGGACAGGTCCTGGAGGAGGAGGCAGGTCGGAGCGTA
CAGAGTCGGGGCCTGCCTAAGGCTGTATGCGTGAACGGCACCGAGTCAGTCCAGCTGAGT
GCCAAGTCGAGAGCGGAGCGCCGGGCCAGCGCCACCTCCAACCCCACCCGCAAGGCCTGT
TCGGCCAGCAGCAAGATCCGCCGGCTGTCAGCCTGCAAGCAGCAGTGAGGGTGGCTGCCT
CCAGCCTATCTCCAGGAGCCCCAGCCAGGTCCTGCTCAGTCTTCCTGCCTACTGCTGGTC
TGCTGCCCACCGCCCCAGGAAGGCCGACGCTGCACCCTTCGTGCTGACCGCCCCTTCAGA
AGCCAGGGGGTCCTAGAGGGCTGTGGCTAGGGGCAGCAGAGACTGGAGCCCGTCCCTCCC
CTGATGGCCGGTGGACACGATCTCCTGCTGACTGCAATCCTATGCTGAGCCCCCTCCCCC
AGCCAGGGGAGGAGGGAGAGGGCCCGGTGTGGCCCCGAGCCAGCCTTTGCCATGCACTTT
ACGTTGAGACTACTGGTTCTCGCCCACCCTGACTCCTCTTTTTACTCTGCCACTCGTTAG
CGCCTCCCACACCTGGTGATGTGTTCAAGCCAACCACAGCGGCAGCAGGATGGGCGTGAC
GACCAGGCCTGTCCACTGAGATGCATGCCTAGTGCCCAAGGGAGCCAGGCGGCTGCCTTG
TTTTGTTGTTTTGGTTGGTTCCTGTTTCTTTTTTTCTTTTTTCTTTTTTTTTTTTTTAAG
AAAAAATAAAACAGGTGGATTTGAAAAAAAAAAAAAAGGGATGTTTGGGAATTGTGGGTG
GCAGGATGTATTATCAAGTGGGTGATCAGAGTCTGAGCCTGGGGCCCTTTGTAGATCCTG
TGGTGGAGGGGCTGGCCGGGGTCTGCAGGTCTTGCTGGTAGTGCCTGGTAGGGACATGGC
CTTTGGCCATGTTGGATCTCTGTGCTGTCTTGGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAGTACCTGCACAGCCAGGGCATCGTGCACAAGGACATTAAGCCTGGCAACCTGCTG
CTCACCACAGGTGGCACACTCAAGATCTCTGACCTGGGTGTGGCTGAGGCCCTGCACCCC
TTTGCTGAGGATGACACCTGCCGAACGAGCCAGGGCTCCCCTGCGTTCCAGCCGCCTGAG
ATTGCCAATGGCCTGGACACCTTCTCTGGCTTCAAGGTGGACATCTGGTCGGCTGGGGTC
ACGCTCTACAACATCACAACAGGACTGTACCCGTTCGAGGGGGACAACATCTACAAGCTG
TTTGAGAACATCGGGAAGGGGGACTACAGCATCCCTGGGGACTGCGGACCCCCCCTCTCA
GACCTGCTGAGAGGAATGCTGGAATACGAGCCGGCCAAGAGGTTTTCCATACAGCAGATC
CGGCAGCACAGCTGGTTCCGGAAGAAGCACCCACCAGCTGAGGAGCCAGTGCCCATCCCA
CCAAGCACGGACTGCAAGGACCGGTGGCGCGGCATGACGGTGGTGCCGTACTTGGAAGAT
TTGCACGGCTGTGCAGATGACGTGGACGACGAGCTCTTCGACATCGAGGACGACATTATC
CACACACTCGCCCTCTCCCTCCTAGGACAGGTCCTGGAGGAGGAGGCAGGTCGGAGCGTA
CAGAGTCGGGGCCTGCCTAAGGCTGTATGCGTGAACGGCACCGAGTCAGTCCAGCTGAGT
GCCAAGTCGAGAGCGGAGCGCCGGGCCAGCGCCACCTCCAACCCCACCCGCAAGGCCTGT
TCGGCCAGCAGCAAGATCCGCCGGCTGTCAGCCTGCAAGCAGCAGTGAGGGTGGCTGCCT
CCAGCCTATCTCCAGGAGCCCCAGCCAGGTCCTGCTCAGTCTTCCTGCCTACTGCTGGTC
TGCTGCCCACCGCCCCAGGAAGGCCGACGCTGCACCCTTCGTGCTGACCGCCCCTTCAGA
AGCCAGGGGGTCCTAGAGGGCTGTGGCTAGGGGCAGCAGAGACTGGAGCCCGTCCCTCCC
CTGATGGCCGGTGGACACGATCTCCTGCTGACTGCAATCCTATGCTGAGCCCCCTCCCCC
AGCCAGGGGAGGAGGGAGAGGGCCCGGTGTGGCCCCGAGCCAGCCTTTGCCATGCACTTT
ACGTTGAGACTACTGGTTCTCGCCCACCCTGACTCCTCTTTTTACTCTGCCACTCGTTAG
CGCCTCCCACACCTGGTGATGTGTTCAAGCCAACCACAGCGGCAGCAGGATGGGCGTGAC
GACCAGGCCTGTCCACTGAGATGCATGCCTAGTGCCCAAGGGAGCCAGGCGGCTGCCTTG
TTTTGTTGTTTTGGTTGGTTCCTGTTTCTTTTTTTCTTTTTTCTTTTTTTTTTTTTTAAG
AAAAAATAAAACAGGTGGATTTGAAAAAAAAAAAAAAGGGATGTTTGGGAATTGTGGGTG
GCAGGATGTATTATCAAGTGGGTGATCAGAGTCTGAGCCTGGGGCCCTTTGTAGATCCTG
TGGTGGAGGGGCTGGCCGGGGTCTGCAGGTCTTGCTGGTAGTGCCTGGTAGGGACATGGC
CTTTGGCCATGTTGGATCTCTGTGCTGTCTTGGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5ZEZ1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5ZEZ1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               889-1127, - strand, RNAz p=0.801181
               

               
               1208-1406, + strand, RNAz p=0.998617

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               889-1127, - strand, RNAz p=0.801181
               

               
               1208-1406, + strand, RNAz p=0.998617

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               92-248, gnl|bosTau2|chr7 (29223858-29223702)
               

               
               92-248, gnl|Hg17|chr19 (1171563-1171719)
               

               
               92-248, gnl|Mm7|chr10 (79906928-79907091)
               


               
               601-844, gnl|bosTau2|chr7 (29218316-29218073)
               

               
               601-844, gnl|Hg17|chr19 (1177428-1177662)
               

               
               601-844, gnl|Mm7|chr10 (79910606-79910830)
               


               
               849-1589, gnl|bosTau2|chr7 (29217285-29216571)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-248, gnl|bosTau2|chr7 (29223858-29223702)
               

               
               92-248, gnl|Hg17|chr19 (1171563-1171719)
               

               
               92-248, gnl|Mm7|chr10 (79906928-79907091)
               


               
               601-844, gnl|bosTau2|chr7 (29218316-29218073)
               

               
               601-844, gnl|Hg17|chr19 (1177428-1177662)
               

               
               601-844, gnl|Mm7|chr10 (79910606-79910830)
               


               
               849-1589, gnl|bosTau2|chr7 (29217285-29216571)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               nms (0.641574)
               

               
               mas (0.630915)
               

               
               amn (0.417711)
               

               
               nbm (0.297974)
               

               
               lnt (0.284616)
               

               
               clu (0.239292)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.641574)
               

               
               mas (0.630915)
               

               
               amn (0.417711)
               

               
               nbm (0.297974)
               

               
               lnt (0.284616)
               

               
               clu (0.239292)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	889-1127, - strand, RNAz p=0.801181
	1208-1406, + strand, RNAz p=0.998617

	92-248, gnl\|bosTau2\|chr7 (29223858-29223702)
	92-248, gnl\|Hg17\|chr19 (1171563-1171719)
	92-248, gnl\|Mm7\|chr10 (79906928-79907091)

	601-844, gnl\|bosTau2\|chr7 (29218316-29218073)
	601-844, gnl\|Hg17\|chr19 (1177428-1177662)
	601-844, gnl\|Mm7\|chr10 (79910606-79910830)

	849-1589, gnl\|bosTau2\|chr7 (29217285-29216571)

	nms (0.641574)
	mas (0.630915)
	amn (0.417711)
	nbm (0.297974)
	lnt (0.284616)
	clu (0.239292)
	hea (0.204499)
	col (0.195008)
	nlu (0.191681)
	fty (0.17584)
	ill (0.175593)
	cag (0.151194)
	pla (0.133672)
	cov (0.132153)
	ese (0.126502)
	med (0.116252)
	jej (0.0989218)
	ldo (0.0970026)