Ss1.1-Mixn-0023g21.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GTTCGGTCCTCTCTGCTCCTCGCCCCTTGCCAGCTTCCACCCGGGAGGTCCCCCAGGCAG CCTGCAGCATGATCTCCATCACCGAATGGCAGAAGATTGGTGTGGGCACCACCGGCTTCG GCATCTTCTTTATCCTCTTTGGGATGCTCCTGTACTTTGACTCCGTGCTCCTCGCCTTCG GAAATCTGCTGTTCCTGACCGGCCTGTCCCTCATCATCGGCCTGAGGAAGACGTTTTCCT TCTTCTTCCAGAGGCACAAGCTCAAGGGGACCAGCTTCTTCCTGGGGGGTGTGCTAGTTG TGCTTCTGCGCTGGCCCCTCCTGGGCATGTGCCTGGAGACCTACGGCTTCTTTAGCCTCT TCAAGGGCTTTTTCCCTGTGGCCTTTGGCTTCCTGGGTAATACCTCCAACATCCCCTTCC TGAGTGCGCTGTTCCGGAGGCTACAAGGCACCAGCTCAATGGTCTGAACAGCAAGAGATA AGCTCCTTGAATTTGGATCATCAGCGGAGGGGGCTGGAAAGGAAATGGGGGCCACCCCAT CAGGCCCCCACCCCGCACTGACTCATGTCCCCGTCATACCTGGACCTCTCCAAGTCCAGA AGGAAGGATAGAGCTGAGTGACTGACCTCAACTCCCCACGTCAACTTAAGAGGCTGTTTA GGACTGTTGAGAGCAGAGATCCAGGGCCCCACGGAGAACAGCCTGGGCTGGGATCACATC CCACTCTGTATTTATCAGAGAAAAGGCAAAGATTAAATCCCCAAGCTGTGAATGTGCCTA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GTTCGGTCCTCTCTGCTCCTCGCCCCTTGCCAGCTTCCACCCGGGAGGTCCCCCAGGCAG CCTGCAGCATGATCTCCATCACCGAATGGCAGAAGATTGGTGTGGGCACCACCGGCTTCG GCATCTTCTTTATCCTCTTTGGGATGCTCCTGTACTTTGACTCCGTGCTCCTCGCCTTCG GAAATCTGCTGTTCCTGACCGGCCTGTCCCTCATCATCGGCCTGAGGAAGACGTTTTCCT TCTTCTTCCAGAGGCACAAGCTCAAGGGGACCAGCTTCTTCCTGGGGGGTGTGCTAGTTG TGCTTCTGCGCTGGCCCCTCCTGGGCATGTGCCTGGAGACCTACGGCTTCTTTAGCCTCT TCAAGGGCTTTTTCCCTGTGGCCTTTGGCTTCCTGGGTAATACCTCCAACATCCCCTTCC TGAGTGCGCTGTTCCGGAGGCTACAAGGCACCAGCTCAATGGTCTGAACAGCAAGAGATA AGCTCCTTGAATTTGGATCATCAGCGGAGGGGGCTGGAAAGGAAATGGGGGCCACCCCAT CAGGCCCCCACCCCGCACTGACTCATGTCCCCGTCATACCTGGACCTCTCCAAGTCCAGA AGGAAGGATAGAGCTGAGTGACTGACCTCAACTCCCCACGTCAACTTAAGAGGCTGTTTA GGACTGTTGAGAGCAGAGATCCAGGGCCCCACGGAGAACAGCCTGGGCTGGGATCACATC CCACTCTGTATTTATCAGAGAAAAGGCAAAGATTAAATCCCCAAGCTGTGAATGTGCCTA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
166-363, + strand, RNAz p=0.748367 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
166-363, + strand, RNAz p=0.748367 |
Aligned organism(s): 31 entry(ies) | More info |
Aligned organism(s): 31 entry(ies) | Help | Less info |
166-363, gnl|bosTau2|chr23 (16370875-16371070) | |
166-363, gnl|canFam2|chr38 (3777297-3777445) | |
166-363, gnl|danRer3|chr11 (20648072-20647940) | |
166-363, gnl|dasNov1|scaffold_29865 (7401-7252) | |
166-363, gnl|echTel1|scaffold_298471 (61534-61665) | |
166-363, gnl|fr1|chrUn (203181049-203181182) | |
166-363, gnl|galGal2|chrUn (57150553-57150702) | |
166-363, gnl|hg17|chr1 (200902396-200902545) | |
166-363, gnl|Hg17|chr1 (200902611-200902419) | |
166-363, gnl|loxAfr1|scaffold_34712 (40784-40653) | |
166-363, gnl|mm7|chr1 (133221260-133221126) | |
166-363, gnl|Mm7|chr1_random (7530460-7530644) | |
166-363, gnl|monDom2|scaffold_13 (5313500-5313639) | |
166-363, gnl|oryCun1|scaffold_209213 (124006-124137) | |
166-363, gnl|panTro1|chr1 (183843408-183843557) | |
166-363, gnl|rheMac2|chr1 (166232033-166231884) | |
166-363, gnl|rn3|chr13 (46249425-46249291) | |
166-363, gnl|tetNig1|chrUn_random (48406971-48407101) | |
166-363, gnl|xenTro1|scaffold_14340 (3775-3909) | |
428-702, gnl|bosTau2|chr23 (16372881-16373152) | |
428-702, gnl|canFam2|chr38 (3774334-3774617) | |
428-702, gnl|dasNov1|scaffold_29865 (10933-10654) | |
428-702, gnl|echTel1|scaffold_298471 (57234-57503) | |
428-702, gnl|hg17|chr1 (200898952-200899223) | |
428-702, gnl|Hg17|chr1 (200899282-200898977) | |
428-702, gnl|mm7|chr1 (133222861-133222592) | |
428-702, gnl|Mm7|chr1_random (7531922-7532228) | |
428-702, gnl|monDom2|scaffold_13 (5302833-5303131) | |
428-702, gnl|panTro1|chr1 (183839970-183840241) | |
428-702, gnl|rheMac2|chr1 (166235461-166235190) | |
428-702, gnl|rn3|chr13 (46251160-46250887) |
Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
166-363, gnl|bosTau2|chr23 (16370875-16371070) | |
166-363, gnl|canFam2|chr38 (3777297-3777445) | |
166-363, gnl|danRer3|chr11 (20648072-20647940) | |
166-363, gnl|dasNov1|scaffold_29865 (7401-7252) | |
166-363, gnl|echTel1|scaffold_298471 (61534-61665) | |
166-363, gnl|fr1|chrUn (203181049-203181182) | |
166-363, gnl|galGal2|chrUn (57150553-57150702) | |
166-363, gnl|hg17|chr1 (200902396-200902545) | |
166-363, gnl|Hg17|chr1 (200902611-200902419) | |
166-363, gnl|loxAfr1|scaffold_34712 (40784-40653) | |
166-363, gnl|mm7|chr1 (133221260-133221126) | |
166-363, gnl|Mm7|chr1_random (7530460-7530644) | |
166-363, gnl|monDom2|scaffold_13 (5313500-5313639) | |
166-363, gnl|oryCun1|scaffold_209213 (124006-124137) | |
166-363, gnl|panTro1|chr1 (183843408-183843557) | |
166-363, gnl|rheMac2|chr1 (166232033-166231884) | |
166-363, gnl|rn3|chr13 (46249425-46249291) | |
166-363, gnl|tetNig1|chrUn_random (48406971-48407101) | |
166-363, gnl|xenTro1|scaffold_14340 (3775-3909) | |
428-702, gnl|bosTau2|chr23 (16372881-16373152) | |
428-702, gnl|canFam2|chr38 (3774334-3774617) | |
428-702, gnl|dasNov1|scaffold_29865 (10933-10654) | |
428-702, gnl|echTel1|scaffold_298471 (57234-57503) | |
428-702, gnl|hg17|chr1 (200898952-200899223) | |
428-702, gnl|Hg17|chr1 (200899282-200898977) | |
428-702, gnl|mm7|chr1 (133222861-133222592) | |
428-702, gnl|Mm7|chr1_random (7531922-7532228) | |
428-702, gnl|monDom2|scaffold_13 (5302833-5303131) | |
428-702, gnl|panTro1|chr1 (183839970-183840241) | |
428-702, gnl|rheMac2|chr1 (166235461-166235190) | |
428-702, gnl|rn3|chr13 (46251160-46250887) |
Expressed library(ies): 4 entry(ies) | More info |
Expressed library(ies): 4 entry(ies) | Help | Less info |
nje (0.33184) | |
jej (0.197844) | |
ill (0.175593) | |
eli (0.151814) |
Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nje (0.33184) | |
jej (0.197844) | |
ill (0.175593) | |
eli (0.151814) |