Ss1.1-Mixn-0023i19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCAGATTCTGCTCAGGCCCAGAAGCTGGTGTACCTGGTCACAGGTGGCTGTGGCTTCC TGGGGGAACATGTGGTCCGCATGCTGCTGCAGCAGGAACCCCGGCTCTGTGAGCTGCGCG TCTTCGACCTACACCTGGGCCCCTGGCTGGAGGAACTGGAGACAGGGCCCGTGCAGGTGA CTGCCATCCAGGGGGACGTGACCCAGGCCCATGAGGTGGCAGCGGCTGTGGCCGGAGCCC ACGTGGTCATCCACACAGCTGGGCTGGTGGATGTGTTCGGGAGAGCCAGTCCAGAGACCA TCCATGAGGTCAACGTGCAGGGCACACAGAATGTGATCGAGGCTTGTGTGCAGAATGGAA CACGCTTCCTGGTCTACACAAGCAGCATGGAAGTTGTGGGGCCCAACATCAAGGGCCAGC CCTTCTACAGGGGCAATGAGAATACCCCATACGAGGCAGCACACAGACATCCGTATCCTC GCAGCAAGGCCCTGGCTGAGCGGCTGGTCCTCGAAGCCAACGGAAGGAAGGTCCGCGGGG GGCTGCCCCTAGTGACGTGTGCCCTGCGTCCCACTGGCATCTATGGTGAAGGCCACCAGA TCATGAAGGACTTCTACCACCAGGGCCTGCGCCTGGGGGGTCGGCTCTTACGGGCCATCC CGGCCTCTGTGGAGCATGGCCGGGTCTACGTGGGTAACGTGGCCTGGATGCACGTGCTGG TGGCCCGGGAGCTAGAGCACCGAGCGCCACTGATGGGTGGCCAGGTGTACTTCTGCTATG ACAACTCACCCTACAAGAGCTACGAGGACTTCAACATGGAGTTCTTGGGCCCCTGCGGAC TGCGGCTGGTGGGCAGCCGCCCGCTGCTGCCTTACTGGCTGTTGCTGTTTCTGGCCACCC TCAATGCCCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCAGATTCTGCTCAGGCCCAGAAGCTGGTGTACCTGGTCACAGGTGGCTGTGGCTTCC TGGGGGAACATGTGGTCCGCATGCTGCTGCAGCAGGAACCCCGGCTCTGTGAGCTGCGCG TCTTCGACCTACACCTGGGCCCCTGGCTGGAGGAACTGGAGACAGGGCCCGTGCAGGTGA CTGCCATCCAGGGGGACGTGACCCAGGCCCATGAGGTGGCAGCGGCTGTGGCCGGAGCCC ACGTGGTCATCCACACAGCTGGGCTGGTGGATGTGTTCGGGAGAGCCAGTCCAGAGACCA TCCATGAGGTCAACGTGCAGGGCACACAGAATGTGATCGAGGCTTGTGTGCAGAATGGAA CACGCTTCCTGGTCTACACAAGCAGCATGGAAGTTGTGGGGCCCAACATCAAGGGCCAGC CCTTCTACAGGGGCAATGAGAATACCCCATACGAGGCAGCACACAGACATCCGTATCCTC GCAGCAAGGCCCTGGCTGAGCGGCTGGTCCTCGAAGCCAACGGAAGGAAGGTCCGCGGGG GGCTGCCCCTAGTGACGTGTGCCCTGCGTCCCACTGGCATCTATGGTGAAGGCCACCAGA TCATGAAGGACTTCTACCACCAGGGCCTGCGCCTGGGGGGTCGGCTCTTACGGGCCATCC CGGCCTCTGTGGAGCATGGCCGGGTCTACGTGGGTAACGTGGCCTGGATGCACGTGCTGG TGGCCCGGGAGCTAGAGCACCGAGCGCCACTGATGGGTGGCCAGGTGTACTTCTGCTATG ACAACTCACCCTACAAGAGCTACGAGGACTTCAACATGGAGTTCTTGGGCCCCTGCGGAC TGCGGCTGGTGGGCAGCCGCCCGCTGCTGCCTTACTGGCTGTTGCTGTTTCTGGCCACCC TCAATGCCCTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 163-281, + strand, RNAz p=0.935844 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 163-281, + strand, RNAz p=0.935844 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 163-322, gnl|bosTau2|chr25 (22884610-22884769) | |
| 163-322, gnl|Hg17|chr16 (30904868-30905027) | |
| 163-322, gnl|Mm7|chr7 (123898016-123898175) | |
| 425-532, gnl|bosTau2|chr25 (22885213-22885321) | |
| 425-532, gnl|canFam2|chr6 (20232624-20232519) | |
| 425-532, gnl|dasNov1|scaffold_36605 (501-606) | |
| 425-532, gnl|echTel1|scaffold_300498 (8474-8577) | |
| 425-532, gnl|fr1|chrUn (140134195-140134294) | |
| 425-532, gnl|hg17|chr16 (30905414-30905519) | |
| 425-532, gnl|Hg17|chr16 (30905420-30905528) | |
| 425-532, gnl|mm7|chr7 (123898559-123898664) | |
| 425-532, gnl|Mm7|chr7 (123898565-123898673) | |
| 425-532, gnl|monDom2|scaffold_17 (9006226-9006331) | |
| 425-532, gnl|oryCun1|scaffold_197148 (7579-7683) | |
| 425-532, gnl|panTro1|chr18 (31694823-31694928) | |
| 425-532, gnl|rheMac2|chr20 (29075712-29075817) | |
| 425-532, gnl|rn3|chr1 (187237058-187237163) | |
| 425-532, gnl|tetNig1|chr3 (13722126-13722229) | |
| 425-532, gnl|xenTro1|scaffold_690 (201083-200988) | |
| 693-912, gnl|bosTau2|chr25 (22886344-22886563) | |
| 693-912, gnl|canFam2|chr6 (20231675-20231281) | |
| 693-912, gnl|dasNov1|scaffold_36605 (1367-1761) | |
| 693-912, gnl|fr1|chrUn (140135182-140135548) | |
| 693-912, gnl|hg17|chr16 (30906588-30906982) | |
| 693-912, gnl|Hg17|chr16 (30906589-30906808) | |
| 693-912, gnl|loxAfr1|scaffold_26866 (39945-39549) | |
| 693-912, gnl|mm7|chr7 (123899342-123899736) | |
| 693-912, gnl|Mm7|chr7 (123899343-123899562) | |
| 693-912, gnl|monDom2|scaffold_17 (9007189-9007583) | |
| 693-912, gnl|oryCun1|scaffold_197148 (8277-8671) | |
| 693-912, gnl|panTro1|chr18 (31695997-31696392) | |
| 693-912, gnl|rheMac2|chr20 (29076903-29077297) | |
| 693-912, gnl|rn3|chr1 (187237871-187238265) | |
| 693-912, gnl|tetNig1|chr3 (13722763-13723111) | |
| 693-912, gnl|xenTro1|scaffold_690 (200560-200166) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 163-322, gnl|bosTau2|chr25 (22884610-22884769) | |
| 163-322, gnl|Hg17|chr16 (30904868-30905027) | |
| 163-322, gnl|Mm7|chr7 (123898016-123898175) | |
| 425-532, gnl|bosTau2|chr25 (22885213-22885321) | |
| 425-532, gnl|canFam2|chr6 (20232624-20232519) | |
| 425-532, gnl|dasNov1|scaffold_36605 (501-606) | |
| 425-532, gnl|echTel1|scaffold_300498 (8474-8577) | |
| 425-532, gnl|fr1|chrUn (140134195-140134294) | |
| 425-532, gnl|hg17|chr16 (30905414-30905519) | |
| 425-532, gnl|Hg17|chr16 (30905420-30905528) | |
| 425-532, gnl|mm7|chr7 (123898559-123898664) | |
| 425-532, gnl|Mm7|chr7 (123898565-123898673) | |
| 425-532, gnl|monDom2|scaffold_17 (9006226-9006331) | |
| 425-532, gnl|oryCun1|scaffold_197148 (7579-7683) | |
| 425-532, gnl|panTro1|chr18 (31694823-31694928) | |
| 425-532, gnl|rheMac2|chr20 (29075712-29075817) | |
| 425-532, gnl|rn3|chr1 (187237058-187237163) | |
| 425-532, gnl|tetNig1|chr3 (13722126-13722229) | |
| 425-532, gnl|xenTro1|scaffold_690 (201083-200988) | |
| 693-912, gnl|bosTau2|chr25 (22886344-22886563) | |
| 693-912, gnl|canFam2|chr6 (20231675-20231281) | |
| 693-912, gnl|dasNov1|scaffold_36605 (1367-1761) | |
| 693-912, gnl|fr1|chrUn (140135182-140135548) | |
| 693-912, gnl|hg17|chr16 (30906588-30906982) | |
| 693-912, gnl|Hg17|chr16 (30906589-30906808) | |
| 693-912, gnl|loxAfr1|scaffold_26866 (39945-39549) | |
| 693-912, gnl|mm7|chr7 (123899342-123899736) | |
| 693-912, gnl|Mm7|chr7 (123899343-123899562) | |
| 693-912, gnl|monDom2|scaffold_17 (9007189-9007583) | |
| 693-912, gnl|oryCun1|scaffold_197148 (8277-8671) | |
| 693-912, gnl|panTro1|chr18 (31695997-31696392) | |
| 693-912, gnl|rheMac2|chr20 (29076903-29077297) | |
| 693-912, gnl|rn3|chr1 (187237871-187238265) | |
| 693-912, gnl|tetNig1|chr3 (13722763-13723111) | |
| 693-912, gnl|xenTro1|scaffold_690 (200560-200166) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fli (0.405762) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.405762) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cty (0.10408) |