Ss1.1-Mixn-0023o18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGATGCAACCGTGAGGACGTGGGAAGTTGAAAATCCGAAGAAGCAAAAAAGTGTGTTTAA ACCACGGACAATGCAGGGTAAAAAAGTAGTTCCTACCACGTGCACATATAGTAGAGATGG AAACCTCATAGCAGCTGCCTGCCAGAATGGAAGCATACAGATCTGGGACCGAAATTTGAC TGTTCATCCTAAATTCCACTATAAACAAGCTCATGACCCGGGCACAGACACTTCTTGCGT GACTTTTTCCTATGATGGGACTGTACTTGCCTCTCGTGGAGGTGATGATACATTAAAATT ATGGGACATCCGTCAGTTTAATAAACCACTTTTTTCAGCCTCGGGCCTTCCTACCATGTT CCCCATGACTGACTGCTGTTTCAGTCCAGATGATAAACTCATAGTCACCGGTACATCTGT TCAAAGGGGATGTGGCAGCGGCAAGCTTGTTTTCTTTGAGCGCAGGACTTTGCAAAGGGT GTATGAAATAGACATCACAGATGCGAGTGTTGTCCGCTGCCTGTGGCATCCAAAGCTGAA CCAGATCATGGTGGGGACTGGAAATGGATTGGCTAAAGTCTATTATGACCCCAACAAGAG TCAGAGGGGAGCAAAATTATGCGTGGTTAAAACCCAGCGGAAGGCGAAACAAGCAGAGAC TCTAACCCAGGACTACATCATCACCCCGCATGCCTTGCCTATGTTCCGCGAGCCCCGCCA ACGGAGTACAAGGAAACAGCTGGAGAAGGACAGACTGGATCCCCTGAAGTCTCACAAACC TGAACCTCCCGTAGCAGGCCCAGGTCGTGGTGGCCGGGTTGGCACCCATGGGGGCACTCT GTCATCATACATTGTCAAGAACATTGCCTTGGATAAGACCGACGACAGCAATCCACGGGA AGCCATTTTGCGGCACGCCAAGGCCGCCGAGGACAACCCATATTGGGTTTCTCCAGCATA TTCCAAGACTCAGCCCAAAACCATGTTTGCCCAAGTTGAATCTGATGATGAGGAAACAAA AAATGAGCCAGAATGGAAAAAACGTAAAATTTGAAGACTCTCACATGAGAGCTGTTTGCA TGAGTGGAAGGGATATTGAACATTTTTTTAATGAAATAAAAACACATTTTTATGAGCAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGATGCAACCGTGAGGACGTGGGAAGTTGAAAATCCGAAGAAGCAAAAAAGTGTGTTTAA ACCACGGACAATGCAGGGTAAAAAAGTAGTTCCTACCACGTGCACATATAGTAGAGATGG AAACCTCATAGCAGCTGCCTGCCAGAATGGAAGCATACAGATCTGGGACCGAAATTTGAC TGTTCATCCTAAATTCCACTATAAACAAGCTCATGACCCGGGCACAGACACTTCTTGCGT GACTTTTTCCTATGATGGGACTGTACTTGCCTCTCGTGGAGGTGATGATACATTAAAATT ATGGGACATCCGTCAGTTTAATAAACCACTTTTTTCAGCCTCGGGCCTTCCTACCATGTT CCCCATGACTGACTGCTGTTTCAGTCCAGATGATAAACTCATAGTCACCGGTACATCTGT TCAAAGGGGATGTGGCAGCGGCAAGCTTGTTTTCTTTGAGCGCAGGACTTTGCAAAGGGT GTATGAAATAGACATCACAGATGCGAGTGTTGTCCGCTGCCTGTGGCATCCAAAGCTGAA CCAGATCATGGTGGGGACTGGAAATGGATTGGCTAAAGTCTATTATGACCCCAACAAGAG TCAGAGGGGAGCAAAATTATGCGTGGTTAAAACCCAGCGGAAGGCGAAACAAGCAGAGAC TCTAACCCAGGACTACATCATCACCCCGCATGCCTTGCCTATGTTCCGCGAGCCCCGCCA ACGGAGTACAAGGAAACAGCTGGAGAAGGACAGACTGGATCCCCTGAAGTCTCACAAACC TGAACCTCCCGTAGCAGGCCCAGGTCGTGGTGGCCGGGTTGGCACCCATGGGGGCACTCT GTCATCATACATTGTCAAGAACATTGCCTTGGATAAGACCGACGACAGCAATCCACGGGA AGCCATTTTGCGGCACGCCAAGGCCGCCGAGGACAACCCATATTGGGTTTCTCCAGCATA TTCCAAGACTCAGCCCAAAACCATGTTTGCCCAAGTTGAATCTGATGATGAGGAAACAAA AAATGAGCCAGAATGGAAAAAACGTAAAATTTGAAGACTCTCACATGAGAGCTGTTTGCA TGAGTGGAAGGGATATTGAACATTTTTTTAATGAAATAAAAACACATTTTTATGAGCAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 850-967, - strand, RNAz p=0.625784 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 850-967, - strand, RNAz p=0.625784 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 182-283, gnl|bosTau2|chr20 (23375689-23375790) | |
| 182-283, gnl|canFam2|chr4 (74279637-74279739) | |
| 182-283, gnl|canFam2|chr4 (74279784-74279610) | |
| 182-283, gnl|danRer3|chrNA (144497083-144496945) | |
| 182-283, gnl|echTel1|scaffold_283779 (50598-50700) | |
| 182-283, gnl|echTel1|scaffold_283779 (50734-50567) | |
| 182-283, gnl|fr1|chrUn (66631835-66631756) | |
| 182-283, gnl|fr1|chrUn (66631694-66631859) | |
| 182-283, gnl|galGal2|chrZ_random (10654196-10654352) | |
| 182-283, gnl|hg17|chr3 (150665037-150665140) | |
| 182-283, gnl|hg17|chr5 (37733469-37733643) | |
| 182-283, gnl|Hg17|chr5 (37733514-37733615) | |
| 182-283, gnl|loxAfr1|scaffold_7199 (44618-44516) | |
| 182-283, gnl|loxAfr1|scaffold_7199 (44471-44644) | |
| 182-283, gnl|mm7|chr15 (7751020-7751122) | |
| 182-283, gnl|mm7|chr15 (7751164-7750996) | |
| 182-283, gnl|Mm7|chr15 (7751120-7751019) | |
| 182-283, gnl|monDom2|scaffold_20 (34468961-34468794) | |
| 182-283, gnl|monDom2|scaffold_22 (954476-954554) | |
| 182-283, gnl|oryCun1|scaffold_176607 (43430-43259) | |
| 182-283, gnl|oryCun1|scaffold_199775 (41922-41821) | |
| 182-283, gnl|panTro1|chr2 (153691201-153691304) | |
| 182-283, gnl|panTro1|chr4 (79018544-79018370) | |
| 182-283, gnl|rheMac2|chr2 (138331688-138331585) | |
| 182-283, gnl|rheMac2|chr6 (37540751-37540925) | |
| 182-283, gnl|rn3|chr2 (57438428-57438530) | |
| 182-283, gnl|rn3|chr2 (57438574-57438404) | |
| 182-283, gnl|tetNig1|chr4 (1916210-1916112) | |
| 182-283, gnl|tetNig1|chr4 (1916072-1916234) | |
| 367-505, gnl|bosTau2|chr20 (23381337-23381475) | |
| 367-505, gnl|canFam2|chr4 (74275175-74275272) | |
| 367-505, gnl|canFam2|chr4 (74275322-74275148) | |
| 367-505, gnl|danRer3|chrNA (144493034-144492865) | |
| 367-505, gnl|dasNov1|scaffold_137974 (4157-4060) | |
| 367-505, gnl|dasNov1|scaffold_137974 (4010-4184) | |
| 367-505, gnl|echTel1|scaffold_321082 (1548-1374) | |
| 367-505, gnl|echTel1|scaffold_323631 (845-742) | |
| 367-505, gnl|fr1|chrUn (66632533-66632436) | |
| 367-505, gnl|fr1|chrUn (66632385-66632543) | |
| 367-505, gnl|galGal2|chrZ_random (10661762-10661940) | |
| 367-505, gnl|hg17|chr3 (150664820-150664917) | |
| 367-505, gnl|hg17|chr5 (37738796-37738970) | |
| 367-505, gnl|Hg17|chr5 (37738808-37738946) | |
| 367-505, gnl|loxAfr1|scaffold_7199 (49764-49667) | |
| 367-505, gnl|loxAfr1|scaffold_7199 (49618-49791) | |
| 367-505, gnl|mm7|chr15 (7747305-7747402) | |
| 367-505, gnl|mm7|chr15 (7747452-7747276) | |
| 367-505, gnl|Mm7|chr15 (7747438-7747300) | |
| 367-505, gnl|monDom2|scaffold_20 (34459247-34459073) | |
| 367-505, gnl|monDom2|scaffold_22 (954257-954354) | |
| 367-505, gnl|oryCun1|scaffold_176607 (37830-37656) | |
| 367-505, gnl|oryCun1|scaffold_199775 (42133-42037) | |
| 367-505, gnl|panTro1|chr2 (153690984-153691081) | |
| 367-505, gnl|panTro1|chr4 (79013209-79013035) | |
| 367-505, gnl|rheMac2|chr2 (138331906-138331809) | |
| 367-505, gnl|rheMac2|chr6 (37546417-37546591) | |
| 367-505, gnl|rn3|chr2 (57434812-57434909) | |
| 367-505, gnl|rn3|chr2 (57434959-57434783) | |
| 367-505, gnl|tetNig1|chr4 (1916898-1916801) | |
| 367-505, gnl|tetNig1|chr4 (1916762-1916908) | |
| 801-967, gnl|bosTau2|chr20 (23407963-23408129) | |
| 801-967, gnl|Hg17|chr5 (37762739-37762905) | |
| 801-967, gnl|Mm7|chr15 (7711259-7711093) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-283, gnl|bosTau2|chr20 (23375689-23375790) | |
| 182-283, gnl|canFam2|chr4 (74279637-74279739) | |
| 182-283, gnl|canFam2|chr4 (74279784-74279610) | |
| 182-283, gnl|danRer3|chrNA (144497083-144496945) | |
| 182-283, gnl|echTel1|scaffold_283779 (50598-50700) | |
| 182-283, gnl|echTel1|scaffold_283779 (50734-50567) | |
| 182-283, gnl|fr1|chrUn (66631835-66631756) | |
| 182-283, gnl|fr1|chrUn (66631694-66631859) | |
| 182-283, gnl|galGal2|chrZ_random (10654196-10654352) | |
| 182-283, gnl|hg17|chr3 (150665037-150665140) | |
| 182-283, gnl|hg17|chr5 (37733469-37733643) | |
| 182-283, gnl|Hg17|chr5 (37733514-37733615) | |
| 182-283, gnl|loxAfr1|scaffold_7199 (44618-44516) | |
| 182-283, gnl|loxAfr1|scaffold_7199 (44471-44644) | |
| 182-283, gnl|mm7|chr15 (7751020-7751122) | |
| 182-283, gnl|mm7|chr15 (7751164-7750996) | |
| 182-283, gnl|Mm7|chr15 (7751120-7751019) | |
| 182-283, gnl|monDom2|scaffold_20 (34468961-34468794) | |
| 182-283, gnl|monDom2|scaffold_22 (954476-954554) | |
| 182-283, gnl|oryCun1|scaffold_176607 (43430-43259) | |
| 182-283, gnl|oryCun1|scaffold_199775 (41922-41821) | |
| 182-283, gnl|panTro1|chr2 (153691201-153691304) | |
| 182-283, gnl|panTro1|chr4 (79018544-79018370) | |
| 182-283, gnl|rheMac2|chr2 (138331688-138331585) | |
| 182-283, gnl|rheMac2|chr6 (37540751-37540925) | |
| 182-283, gnl|rn3|chr2 (57438428-57438530) | |
| 182-283, gnl|rn3|chr2 (57438574-57438404) | |
| 182-283, gnl|tetNig1|chr4 (1916210-1916112) | |
| 182-283, gnl|tetNig1|chr4 (1916072-1916234) | |
| 367-505, gnl|bosTau2|chr20 (23381337-23381475) | |
| 367-505, gnl|canFam2|chr4 (74275175-74275272) | |
| 367-505, gnl|canFam2|chr4 (74275322-74275148) | |
| 367-505, gnl|danRer3|chrNA (144493034-144492865) | |
| 367-505, gnl|dasNov1|scaffold_137974 (4157-4060) | |
| 367-505, gnl|dasNov1|scaffold_137974 (4010-4184) | |
| 367-505, gnl|echTel1|scaffold_321082 (1548-1374) | |
| 367-505, gnl|echTel1|scaffold_323631 (845-742) | |
| 367-505, gnl|fr1|chrUn (66632533-66632436) | |
| 367-505, gnl|fr1|chrUn (66632385-66632543) | |
| 367-505, gnl|galGal2|chrZ_random (10661762-10661940) | |
| 367-505, gnl|hg17|chr3 (150664820-150664917) | |
| 367-505, gnl|hg17|chr5 (37738796-37738970) | |
| 367-505, gnl|Hg17|chr5 (37738808-37738946) | |
| 367-505, gnl|loxAfr1|scaffold_7199 (49764-49667) | |
| 367-505, gnl|loxAfr1|scaffold_7199 (49618-49791) | |
| 367-505, gnl|mm7|chr15 (7747305-7747402) | |
| 367-505, gnl|mm7|chr15 (7747452-7747276) | |
| 367-505, gnl|Mm7|chr15 (7747438-7747300) | |
| 367-505, gnl|monDom2|scaffold_20 (34459247-34459073) | |
| 367-505, gnl|monDom2|scaffold_22 (954257-954354) | |
| 367-505, gnl|oryCun1|scaffold_176607 (37830-37656) | |
| 367-505, gnl|oryCun1|scaffold_199775 (42133-42037) | |
| 367-505, gnl|panTro1|chr2 (153690984-153691081) | |
| 367-505, gnl|panTro1|chr4 (79013209-79013035) | |
| 367-505, gnl|rheMac2|chr2 (138331906-138331809) | |
| 367-505, gnl|rheMac2|chr6 (37546417-37546591) | |
| 367-505, gnl|rn3|chr2 (57434812-57434909) | |
| 367-505, gnl|rn3|chr2 (57434959-57434783) | |
| 367-505, gnl|tetNig1|chr4 (1916898-1916801) | |
| 367-505, gnl|tetNig1|chr4 (1916762-1916908) | |
| 801-967, gnl|bosTau2|chr20 (23407963-23408129) | |
| 801-967, gnl|Hg17|chr5 (37762739-37762905) | |
| 801-967, gnl|Mm7|chr15 (7711259-7711093) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| csp (0.161186) | |
| isp (0.150376) | |
| ste (0.135208) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| isp (0.150376) | |
| ste (0.135208) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ecc (0.115035) |