Ss1.1-Mixn-0023p11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGCTGTCGCTGCGGGTTTCGCGCGCTGGGTGCCCGGCTCCGCGCCCTGTGGAGGATGT GCTGTGATGTTTTCTGAGGAGCCGAAGCCATGAGCGAATTTCGGATTCACCACGACGTCA ACGAGCTGCTCAGCCTGCTCCGGGTCCACGGAGGGGATGGGGCTGAGGTCTACATTGACC TGCTGCAGAAGAACAGGACCCCGTATGTCACCACCACCGTGTCTGCCCACAGTGCCAAGG TTAAAATAGCAGAATTTTCTCGCACTCCTGAGGACTTTCTGAAGAAATACGATGAACTGA AGTCTAAGAACACAAGGAACCTCGACCCCCTGGTGTACCTGCTGTCGAAGCTCACGGAGG ACAGGGAGACGCTGCAGTACTTACAGCAGAATGCCAAGGAGAGAGCGGAGCTCGCGGCCA GTGCTGCGGCCAGCAGCACCGCCAGCTTCGGCGCCTCCGCCACGGCCTCCAAGATCTCCA TGCAGGAGCTGGAGGAGCTGAGGAAGCAACTGGGCAGCGTGGCCACGGGCCCCACGTGGC AGCAGTCCCTGGAGCTCACCAGGAAGATGCTTCGAGACAAGCAGAGCAAAAAAAACTCGG GCCAGCGTCTCCCGGTCCTCCCGGCGTGGGTGTACGAGAGGCCCGCGCTGCTCGGGGACT TCCTGCCCGGGACGGGCGGGAGCGCGGACACAGCTGTTCCCATAGGCTCGCTGCCCCTGG CCTCCCAGGAGGCGGCCGTGGTGGAGGACCTGCTGTACGTGCTGGTGGGCGTGGACGGCA GGTACATCAGCGCCCAGCCCCTCACGGGCAGGCAGGGCCGCACCTTCCTGGTGGACCCCA ACCTGGACCTGTCCATCCGCGAGCTGGTGAGCAGGATCCTGCCGGTGGCCGCCAGCTACT CCACCGTGACCAGGTTCATCGAGGAGAAGTCCTCCTTCGAGTACGGGCAGGTGAACCACG GAGCAGGGACGAGGGCGCCTGGGGTGTCTCCTGGGGAGGAGCTGCGTGCAGGCGGCCTGG CCTCCTGAGGCGGCTGTGCCCTGGGGCTGGGCTGTGTGCCTTTCGTGCTGCAGGTTCATC GAGGAGAAGTCCTCCTTCGAGTACGGGCAGGTGAACCACGCCTTGGCGGCTGCCATGAGG ACACTGGTGAAGGAGTACCTGGTCCTGGTCACGCAGCTGGAGCAGCTGCAGAGGCAGGGC CTCCTGTCGCTGCAGAAGCTCTGGTTCTACATCCAGCCTGCCATGCGCTCCCTGGACATC CTGGCCTCCCTGGGTGCGGCCCGGGCTGGGGTGCTCAGCCTCCACTGCTCACGGTCGCGA GAGCCAGGCTGTGTAGCTTCGTGGGGAGTTAGCTGGTGTGTGGGCGGAAGACAGGGAGCG GTCAGGGGAGTGGCCAGAAAGTGCAGCCTTAGAGTTTGAGTCCATCCCACAGAGAAAGCC TGTCCCGCATTCCCGTCGTGGCCCAGCAGGTTAAGAACCTGACTGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGCTGTCGCTGCGGGTTTCGCGCGCTGGGTGCCCGGCTCCGCGCCCTGTGGAGGATGT GCTGTGATGTTTTCTGAGGAGCCGAAGCCATGAGCGAATTTCGGATTCACCACGACGTCA ACGAGCTGCTCAGCCTGCTCCGGGTCCACGGAGGGGATGGGGCTGAGGTCTACATTGACC TGCTGCAGAAGAACAGGACCCCGTATGTCACCACCACCGTGTCTGCCCACAGTGCCAAGG TTAAAATAGCAGAATTTTCTCGCACTCCTGAGGACTTTCTGAAGAAATACGATGAACTGA AGTCTAAGAACACAAGGAACCTCGACCCCCTGGTGTACCTGCTGTCGAAGCTCACGGAGG ACAGGGAGACGCTGCAGTACTTACAGCAGAATGCCAAGGAGAGAGCGGAGCTCGCGGCCA GTGCTGCGGCCAGCAGCACCGCCAGCTTCGGCGCCTCCGCCACGGCCTCCAAGATCTCCA TGCAGGAGCTGGAGGAGCTGAGGAAGCAACTGGGCAGCGTGGCCACGGGCCCCACGTGGC AGCAGTCCCTGGAGCTCACCAGGAAGATGCTTCGAGACAAGCAGAGCAAAAAAAACTCGG GCCAGCGTCTCCCGGTCCTCCCGGCGTGGGTGTACGAGAGGCCCGCGCTGCTCGGGGACT TCCTGCCCGGGACGGGCGGGAGCGCGGACACAGCTGTTCCCATAGGCTCGCTGCCCCTGG CCTCCCAGGAGGCGGCCGTGGTGGAGGACCTGCTGTACGTGCTGGTGGGCGTGGACGGCA GGTACATCAGCGCCCAGCCCCTCACGGGCAGGCAGGGCCGCACCTTCCTGGTGGACCCCA ACCTGGACCTGTCCATCCGCGAGCTGGTGAGCAGGATCCTGCCGGTGGCCGCCAGCTACT CCACCGTGACCAGGTTCATCGAGGAGAAGTCCTCCTTCGAGTACGGGCAGGTGAACCACG GAGCAGGGACGAGGGCGCCTGGGGTGTCTCCTGGGGAGGAGCTGCGTGCAGGCGGCCTGG CCTCCTGAGGCGGCTGTGCCCTGGGGCTGGGCTGTGTGCCTTTCGTGCTGCAGGTTCATC GAGGAGAAGTCCTCCTTCGAGTACGGGCAGGTGAACCACGCCTTGGCGGCTGCCATGAGG ACACTGGTGAAGGAGTACCTGGTCCTGGTCACGCAGCTGGAGCAGCTGCAGAGGCAGGGC CTCCTGTCGCTGCAGAAGCTCTGGTTCTACATCCAGCCTGCCATGCGCTCCCTGGACATC CTGGCCTCCCTGGGTGCGGCCCGGGCTGGGGTGCTCAGCCTCCACTGCTCACGGTCGCGA GAGCCAGGCTGTGTAGCTTCGTGGGGAGTTAGCTGGTGTGTGGGCGGAAGACAGGGAGCG GTCAGGGGAGTGGCCAGAAAGTGCAGCCTTAGAGTTTGAGTCCATCCCACAGAGAAAGCC TGTCCCGCATTCCCGTCGTGGCCCAGCAGGTTAAGAACCTGACTGAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 367-1259, - strand, RNAz p=0.754321 | |
| 432-1276, + strand, RNAz p=0.935399 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 367-1259, - strand, RNAz p=0.754321 | |
| 432-1276, + strand, RNAz p=0.935399 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 63-241, gnl|bosTau2|chr26 (34911519-34911693) | |
| 63-241, gnl|Hg17|chr10 (135005355-135005175) | |
| 63-241, gnl|Mm7|chr7 (136447571-136447398) | |
| 367-545, gnl|bosTau2|chr26 (34892159-34892337) | |
| 367-545, gnl|canFam2|chr28 (43871676-43871910) | |
| 367-545, gnl|danRer3|chr12 (5463544-5463328) | |
| 367-545, gnl|echTel1|scaffold_273397 (11980-12184) | |
| 367-545, gnl|fr1|chrUn (159524400-159524573) | |
| 367-545, gnl|galGal2|chr6 (8718403-8718650) | |
| 367-545, gnl|hg17|chr10 (135001788-135002029) | |
| 367-545, gnl|Hg17|chr10 (135001990-135001770) | |
| 367-545, gnl|mm7|chr7 (136444774-136445012) | |
| 367-545, gnl|Mm7|chr7 (136444976-136444798) | |
| 367-545, gnl|monDom2|scaffold_384 (23228-23490) | |
| 367-545, gnl|oryCun1|scaffold_176317 (89495-89257) | |
| 367-545, gnl|panTro1|chr8 (137831984-137832225) | |
| 367-545, gnl|rheMac2|chr9 (132948893-132949134) | |
| 367-545, gnl|rn3|chr1 (199964266-199964507) | |
| 367-545, gnl|tetNig1|chr2 (1581791-1581621) | |
| 367-545, gnl|xenTro1|scaffold_379 (1068699-1068895) | |
| 694-915, gnl|bosTau2|chr26 (34895470-34895691) | |
| 694-915, gnl|canFam2|chr28 (43868207-43868438) | |
| 694-915, gnl|danRer3|chr12 (5465107-5464892) | |
| 694-915, gnl|dasNov1|scaffold_113504 (1211-1399) | |
| 694-915, gnl|echTel1|scaffold_273397 (9593-9793) | |
| 694-915, gnl|fr1|chrUn (159523739-159523956) | |
| 694-915, gnl|galGal2|chr6 (8713116-8713329) | |
| 694-915, gnl|hg17|chr10 (134995928-134996159) | |
| 694-915, gnl|Hg17|chr10 (134996166-134995945) | |
| 694-915, gnl|loxAfr1|scaffold_45997 (4429-4649) | |
| 694-915, gnl|mm7|chr7 (136421662-136421886) | |
| 694-915, gnl|Mm7|chr7 (136421894-136421672) | |
| 694-915, gnl|monDom2|scaffold_384 (20152-20338) | |
| 694-915, gnl|oryCun1|scaffold_176317 (93938-93713) | |
| 694-915, gnl|panTro1|chr8 (137826108-137826339) | |
| 694-915, gnl|rheMac2|chr9 (132942634-132942865) | |
| 694-915, gnl|rn3|chr1 (199957446-199957670) | |
| 694-915, gnl|tetNig1|chr2 (1582432-1582218) | |
| 694-915, gnl|xenTro1|scaffold_379 (1053317-1053528) | |
| 1014-1276, gnl|bosTau2|chr26 (34895813-34896074) | |
| 1014-1276, gnl|canFam2|chr28 (43867528-43867742) | |
| 1014-1276, gnl|danRer3|chr12 (5467220-5467013) | |
| 1014-1276, gnl|dasNov1|scaffold_134693 (280-66) | |
| 1014-1276, gnl|echTel1|scaffold_273397 (9181-9395) | |
| 1014-1276, gnl|fr1|chrUn (159523467-159523674) | |
| 1014-1276, gnl|galGal2|chr6 (8711888-8712097) | |
| 1014-1276, gnl|hg17|chr10 (134995423-134995637) | |
| 1014-1276, gnl|Hg17|chr10 (134995757-134995421) | |
| 1014-1276, gnl|mm7|chr7 (136421213-136421427) | |
| 1014-1276, gnl|Mm7|chr7 (136421452-136421211) | |
| 1014-1276, gnl|monDom2|scaffold_384 (19761-19975) | |
| 1014-1276, gnl|oryCun1|scaffold_176317 (94317-94102) | |
| 1014-1276, gnl|panTro1|chr8 (137825603-137825817) | |
| 1014-1276, gnl|rheMac2|chr9 (132942172-132942386) | |
| 1014-1276, gnl|rn3|chr1 (199957001-199957215) | |
| 1014-1276, gnl|tetNig1|chr2 (1582717-1582518) | |
| 1014-1276, gnl|xenTro1|scaffold_379 (1052992-1053196) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 63-241, gnl|bosTau2|chr26 (34911519-34911693) | |
| 63-241, gnl|Hg17|chr10 (135005355-135005175) | |
| 63-241, gnl|Mm7|chr7 (136447571-136447398) | |
| 367-545, gnl|bosTau2|chr26 (34892159-34892337) | |
| 367-545, gnl|canFam2|chr28 (43871676-43871910) | |
| 367-545, gnl|danRer3|chr12 (5463544-5463328) | |
| 367-545, gnl|echTel1|scaffold_273397 (11980-12184) | |
| 367-545, gnl|fr1|chrUn (159524400-159524573) | |
| 367-545, gnl|galGal2|chr6 (8718403-8718650) | |
| 367-545, gnl|hg17|chr10 (135001788-135002029) | |
| 367-545, gnl|Hg17|chr10 (135001990-135001770) | |
| 367-545, gnl|mm7|chr7 (136444774-136445012) | |
| 367-545, gnl|Mm7|chr7 (136444976-136444798) | |
| 367-545, gnl|monDom2|scaffold_384 (23228-23490) | |
| 367-545, gnl|oryCun1|scaffold_176317 (89495-89257) | |
| 367-545, gnl|panTro1|chr8 (137831984-137832225) | |
| 367-545, gnl|rheMac2|chr9 (132948893-132949134) | |
| 367-545, gnl|rn3|chr1 (199964266-199964507) | |
| 367-545, gnl|tetNig1|chr2 (1581791-1581621) | |
| 367-545, gnl|xenTro1|scaffold_379 (1068699-1068895) | |
| 694-915, gnl|bosTau2|chr26 (34895470-34895691) | |
| 694-915, gnl|canFam2|chr28 (43868207-43868438) | |
| 694-915, gnl|danRer3|chr12 (5465107-5464892) | |
| 694-915, gnl|dasNov1|scaffold_113504 (1211-1399) | |
| 694-915, gnl|echTel1|scaffold_273397 (9593-9793) | |
| 694-915, gnl|fr1|chrUn (159523739-159523956) | |
| 694-915, gnl|galGal2|chr6 (8713116-8713329) | |
| 694-915, gnl|hg17|chr10 (134995928-134996159) | |
| 694-915, gnl|Hg17|chr10 (134996166-134995945) | |
| 694-915, gnl|loxAfr1|scaffold_45997 (4429-4649) | |
| 694-915, gnl|mm7|chr7 (136421662-136421886) | |
| 694-915, gnl|Mm7|chr7 (136421894-136421672) | |
| 694-915, gnl|monDom2|scaffold_384 (20152-20338) | |
| 694-915, gnl|oryCun1|scaffold_176317 (93938-93713) | |
| 694-915, gnl|panTro1|chr8 (137826108-137826339) | |
| 694-915, gnl|rheMac2|chr9 (132942634-132942865) | |
| 694-915, gnl|rn3|chr1 (199957446-199957670) | |
| 694-915, gnl|tetNig1|chr2 (1582432-1582218) | |
| 694-915, gnl|xenTro1|scaffold_379 (1053317-1053528) | |
| 1014-1276, gnl|bosTau2|chr26 (34895813-34896074) | |
| 1014-1276, gnl|canFam2|chr28 (43867528-43867742) | |
| 1014-1276, gnl|danRer3|chr12 (5467220-5467013) | |
| 1014-1276, gnl|dasNov1|scaffold_134693 (280-66) | |
| 1014-1276, gnl|echTel1|scaffold_273397 (9181-9395) | |
| 1014-1276, gnl|fr1|chrUn (159523467-159523674) | |
| 1014-1276, gnl|galGal2|chr6 (8711888-8712097) | |
| 1014-1276, gnl|hg17|chr10 (134995423-134995637) | |
| 1014-1276, gnl|Hg17|chr10 (134995757-134995421) | |
| 1014-1276, gnl|mm7|chr7 (136421213-136421427) | |
| 1014-1276, gnl|Mm7|chr7 (136421452-136421211) | |
| 1014-1276, gnl|monDom2|scaffold_384 (19761-19975) | |
| 1014-1276, gnl|oryCun1|scaffold_176317 (94317-94102) | |
| 1014-1276, gnl|panTro1|chr8 (137825603-137825817) | |
| 1014-1276, gnl|rheMac2|chr9 (132942172-132942386) | |
| 1014-1276, gnl|rn3|chr1 (199957001-199957215) | |
| 1014-1276, gnl|tetNig1|chr2 (1582717-1582518) | |
| 1014-1276, gnl|xenTro1|scaffold_379 (1052992-1053196) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) |