Non-Coding RNA Search

Ss1.1-Mixn-0024a10.5

Sequence:


               
               GATCCCCTGGAGGAGGCCCCAGAGGCCCCAGTGCCCACCAACATGAGCACGGCGGCAGAC
CTCCTGCGTCAGGGCGCCGCCTGCAGTGTGCTCTACCTGACCTCAGTGGAGACCGAGTCG
CTGACGGGCCCCCAGGCGGTGGCGCGGGCCAGCTCAGCAGCTCTGAGCTGCAGCCCCCGG
CCAACACCAGCCATTGTCCACTTCAAGGTCTCAGCGCAGGGCATCACGCTGACAGACAAC
CAAAGGAAGCTCTTCTTTCGCCGCCATTACCCAGTGAACAGCATCACCTTCTCCAGCACC
GACCCTCAGGACCGGAGATGGACCAACCCCGACGGGACCACCTCCAAGATCTTTGGTTTC
GTGGCCAAGAAGCCGGGAAGCCCCTGGGAGAATGTGTGTCACCTCTTTGCAGAGCTTGAC
CCAGATCAGCCCGCAGGCGCCATTGTCACCTTCATCACCAAAGTTCTACTGGGCCAGAGA
AAATGAAGGCAAGCCCACAAGCTCCGAGCCCACGTTGACACTGCGCCCCTCTCAACGCCC
CACAGCCCTCACTTCCCCTGCCTGGTCCCAGGAAACCCGGGAACCAGCCCCTCCCCTGGG
AATGGGGAGTGGACACCGGGCCTGGGACACTGCTCTCCTTCCCTGCCCCCAGCCTGCTAA
GCCAAGCGGACGGGCCTATGAAATGACCTTGCAAGTGAGCAGATGGCAGAGATGGGTGTG
TGAAGGGTGAGGAGGCATCAGCAGTGGAGCCGTGGAGGGGATCAGGGCAGCCCCACCTGC
AGGGGAACATCAGTGCTGGAGGGGAGCCAGGCCCTGCCAGCGCCACCCGGCGGCAGGTCC
CTGCATGGCAGGGAGGAGGAGGGGCGGAGCAAGGCACTCCCTTCTCCGTGTCCCCTCTGA
GCAGAGAGATCAGAGATCGGAGTGGGATCACATGAAATGGGGGGAGAAAAAGAGTCTATT
TTTGTCTAATAATAAAGAGTTCCTATAATGTTTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCCCCTGGAGGAGGCCCCAGAGGCCCCAGTGCCCACCAACATGAGCACGGCGGCAGAC
CTCCTGCGTCAGGGCGCCGCCTGCAGTGTGCTCTACCTGACCTCAGTGGAGACCGAGTCG
CTGACGGGCCCCCAGGCGGTGGCGCGGGCCAGCTCAGCAGCTCTGAGCTGCAGCCCCCGG
CCAACACCAGCCATTGTCCACTTCAAGGTCTCAGCGCAGGGCATCACGCTGACAGACAAC
CAAAGGAAGCTCTTCTTTCGCCGCCATTACCCAGTGAACAGCATCACCTTCTCCAGCACC
GACCCTCAGGACCGGAGATGGACCAACCCCGACGGGACCACCTCCAAGATCTTTGGTTTC
GTGGCCAAGAAGCCGGGAAGCCCCTGGGAGAATGTGTGTCACCTCTTTGCAGAGCTTGAC
CCAGATCAGCCCGCAGGCGCCATTGTCACCTTCATCACCAAAGTTCTACTGGGCCAGAGA
AAATGAAGGCAAGCCCACAAGCTCCGAGCCCACGTTGACACTGCGCCCCTCTCAACGCCC
CACAGCCCTCACTTCCCCTGCCTGGTCCCAGGAAACCCGGGAACCAGCCCCTCCCCTGGG
AATGGGGAGTGGACACCGGGCCTGGGACACTGCTCTCCTTCCCTGCCCCCAGCCTGCTAA
GCCAAGCGGACGGGCCTATGAAATGACCTTGCAAGTGAGCAGATGGCAGAGATGGGTGTG
TGAAGGGTGAGGAGGCATCAGCAGTGGAGCCGTGGAGGGGATCAGGGCAGCCCCACCTGC
AGGGGAACATCAGTGCTGGAGGGGAGCCAGGCCCTGCCAGCGCCACCCGGCGGCAGGTCC
CTGCATGGCAGGGAGGAGGAGGGGCGGAGCAAGGCACTCCCTTCTCCGTGTCCCCTCTGA
GCAGAGAGATCAGAGATCGGAGTGGGATCACATGAAATGGGGGGAGAAAAAGAGTCTATT
TTTGTCTAATAATAAAGAGTTCCTATAATGTTTAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|63803|emb|CAA46992.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|63803|emb|CAA46992.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               460-616, - strand, RNAz p=0.756817
               

               
               853-963, + strand, RNAz p=0.5439

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               460-616, - strand, RNAz p=0.756817
               

               
               853-963, + strand, RNAz p=0.5439

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX647126, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX647126, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               76-249, gnl|bosTau2|chr5 (20514394-20514567)
               

               
               76-249, gnl|canFam2|chr27 (5101367-5101170)
               

               
               76-249, gnl|danRer3|chr23 (6884877-6885082)
               

               
               76-249, gnl|dasNov1|scaffold_43704 (955-1146)
               

               
               76-249, gnl|fr1|chrUn (50244537-50244740)
               

               
               76-249, gnl|galGal2|chr7 (23354381-23354579)
               

               
               76-249, gnl|hg17|chr12 (51743111-51743317)
               

               
               76-249, gnl|Hg17|chr12 (51743136-51743309)
               

               
               76-249, gnl|loxAfr1|scaffold_68094 (812-621)
               

               
               76-249, gnl|mm7|chr15 (102101118-102101324)
               

               
               76-249, gnl|Mm7|chr15 (102101143-102101399)
               

               
               76-249, gnl|monDom2|scaffold_39 (2901472-2901654)
               

               
               76-249, gnl|oryCun1|scaffold_121480 (819-1023)
               

               
               76-249, gnl|panTro1|chr10 (52975482-52975688)
               

               
               76-249, gnl|rheMac2|chr11 (50123583-50123789)
               

               
               76-249, gnl|rn3|chr7 (140930569-140930773)
               

               
               76-249, gnl|tetNig1|chrUn_random (43110722-43110547)
               

               
               76-249, gnl|xenTro1|scaffold_1172 (78283-78101)
               


               
               341-996, gnl|bosTau2|chr5 (20514997-20515622)
               

               
               341-996, gnl|Hg17|chr12 (51743788-51744425)
               

               
               341-996, gnl|Mm7|chr15 (102102008-102102559)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-249, gnl|bosTau2|chr5 (20514394-20514567)
               

               
               76-249, gnl|canFam2|chr27 (5101367-5101170)
               

               
               76-249, gnl|danRer3|chr23 (6884877-6885082)
               

               
               76-249, gnl|dasNov1|scaffold_43704 (955-1146)
               

               
               76-249, gnl|fr1|chrUn (50244537-50244740)
               

               
               76-249, gnl|galGal2|chr7 (23354381-23354579)
               

               
               76-249, gnl|hg17|chr12 (51743111-51743317)
               

               
               76-249, gnl|Hg17|chr12 (51743136-51743309)
               

               
               76-249, gnl|loxAfr1|scaffold_68094 (812-621)
               

               
               76-249, gnl|mm7|chr15 (102101118-102101324)
               

               
               76-249, gnl|Mm7|chr15 (102101143-102101399)
               

               
               76-249, gnl|monDom2|scaffold_39 (2901472-2901654)
               

               
               76-249, gnl|oryCun1|scaffold_121480 (819-1023)
               

               
               76-249, gnl|panTro1|chr10 (52975482-52975688)
               

               
               76-249, gnl|rheMac2|chr11 (50123583-50123789)
               

               
               76-249, gnl|rn3|chr7 (140930569-140930773)
               

               
               76-249, gnl|tetNig1|chrUn_random (43110722-43110547)
               

               
               76-249, gnl|xenTro1|scaffold_1172 (78283-78101)
               


               
               341-996, gnl|bosTau2|chr5 (20514997-20515622)
               

               
               341-996, gnl|Hg17|chr12 (51743788-51744425)
               

               
               341-996, gnl|Mm7|chr15 (102102008-102102559)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               eru (0.360144)
               

               
               cga (0.279096)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.360144)
               

               
               cga (0.279096)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	460-616, - strand, RNAz p=0.756817
	853-963, + strand, RNAz p=0.5439

	76-249, gnl\|bosTau2\|chr5 (20514394-20514567)
	76-249, gnl\|canFam2\|chr27 (5101367-5101170)
	76-249, gnl\|danRer3\|chr23 (6884877-6885082)
	76-249, gnl\|dasNov1\|scaffold_43704 (955-1146)
	76-249, gnl\|fr1\|chrUn (50244537-50244740)
	76-249, gnl\|galGal2\|chr7 (23354381-23354579)
	76-249, gnl\|hg17\|chr12 (51743111-51743317)
	76-249, gnl\|Hg17\|chr12 (51743136-51743309)
	76-249, gnl\|loxAfr1\|scaffold_68094 (812-621)
	76-249, gnl\|mm7\|chr15 (102101118-102101324)
	76-249, gnl\|Mm7\|chr15 (102101143-102101399)
	76-249, gnl\|monDom2\|scaffold_39 (2901472-2901654)
	76-249, gnl\|oryCun1\|scaffold_121480 (819-1023)
	76-249, gnl\|panTro1\|chr10 (52975482-52975688)
	76-249, gnl\|rheMac2\|chr11 (50123583-50123789)
	76-249, gnl\|rn3\|chr7 (140930569-140930773)
	76-249, gnl\|tetNig1\|chrUn_random (43110722-43110547)
	76-249, gnl\|xenTro1\|scaffold_1172 (78283-78101)

	341-996, gnl\|bosTau2\|chr5 (20514997-20515622)
	341-996, gnl\|Hg17\|chr12 (51743788-51744425)
	341-996, gnl\|Mm7\|chr15 (102102008-102102559)

	eru (0.360144)
	cga (0.279096)
	fli (0.202881)
	ton (0.1755)
	fhi (0.169578)
	cli (0.152812)
	cag (0.151194)
	che (0.136314)
	nmm (0.132802)
	cov (0.132153)
	jca (0.11396)