Ss1.1-Mixn-0024a19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCGCTGACCCAGACAGTGAGGTGGCCACTACGAGTCTCCGGGTGTCACTCATGTGCCCG CTAGGGAAGATGCGCTTGACTGTCCCTTGTCGTGCCCTCACCTGCGCCCACCTGCAGAGC TTCGATGCTGCCCTTTATCTACAGATGAATGAGAAGAAGCCAACATGGACGTGTCCTGTG TGTGACAAGAAGGCTCCCTATGAATCTCTTATCATTGATGGGTTATTTATGGAGATTCTT AATTCCTGCTCGGATTGTGATGAGATCCAATTCATGGAAGACGGATCCTGGTGCCCAATG AAACCCAAAAAGGAGGCATCTGAGGTTTGCCCCCCGCCAGGGTATGGGCTGGATGGCCTC CAGTATAGCCCAGTGCAAGAAGGCAATTCATCAGATAATAAAAAGAAGGTTGAAGTTATT GACTTGACAATAGAAAGCTCATCAGACGAGGAGGACCTACCCCCGACCAAGAAGCACTGT CCTGTCACCTCAGCTGCTATCCCGGCTCTACCTGGAAGCAAAGGAGTCCTGACATCGGGT CACCAGCCATCTTCGGTGCTACGGAGCCCTGCTATGGGCACGCTGGGCGGGGACTTCCTG TCCAGCCTCCCCCTACATGAGTACCCACCTGCCTTCCCACTGGGGGCTGATATCCAAGGT TTAGATTTATTTTCTTTCCTTCAGACTGAGAGTCAGCACTATGGCCCCTCCGTCATCACG TCGCTAGATGAACAGGATGCCCTTGGTCACTTCTTCCAGTACCGAGGGACCCCTTCCCAC TTCCTGGGCCCGCTAGCCCCCACACTGGGGAGCTCTCACCGCAGCACCACTCCAGCACCC CCTCCTGGCCGTGTCAGTAACATTGTGGCCCCTGGGGGGACCTTAAGGGAGGGGCATGGA GGACCCCTGCCCTCTGGGCCCTCTTTGACAGGCTGTCGCTCAGACATCATTTCCCTGGAC TGAGTCCCCTGGATTATGGAACCTTCACTGCCTCCCAACACTGAGCGAGTAATGCTGCAA AGTCTGGACCCCTGGCCGCTCTGACCCCTCAGGGGCCTTTGGTCAAAGGCCAGAAAGACC TTCATGGACACGTGTTTTTGGCCTTATGTCTGCCTGACAAGGCCAGCACCCAAAGGGTTA ATATTTAACCTCTTTTTAAGGACATTTGGGGTCTGTTTTGGGAAATGTCCTTGGATGTCC AGCACATTCCTTTGGGTATGTTAACGTAGGCGGTGGGAGGCAAATGGGATGGGAGGTGAG TTGGGGAAAGGGCTGAGTCCTCAGCCTTGACTGTCGAGAGCCTCATGGGGAAAGGGCCCT TCTAGTGTCCCCCAGGCGCCCTCTCTTCCTGTTCCCCAAAGTGGGCTCTGTTCCTTCCCG TGTCCCATGTCTCTTCATGTCCATTCCATTCTCTTTGGCCAGACAGACAGGTGGAATAAC AGATAGGCAGACCCATGGAACAGAGAACTCTATTTTGGGTTGCAGATTTTTTGTGCATAA ACAAGAGAAACCAAAATACTCCAAAGATGACTTTCCCTGCCTCCTACTTCCTAGTATGAC TGAGGAGGAGACACGGCCTTAGCCCTGACCCCTAGGGGTTGGGGGAAAGGGCCTGGCCAA TTGCCTGGGTCTCTATTTATATATTTAAGTTCACAATGTTGCTTATGCTGACCAAGCCGG GGCCTGAGCTTCTAAAGGCCTGTGGCCCCGTGGCGAGGTCTGGCTCATTCTGCACCTTTC CTGGGAGGTGGGAGTGCCCTCGTGCTCTCCCCGGTCTCCCTTTGCAGGCTCCTCTAGGGC CTAGGGACTATGTTGTAATTTTACTTTATATTCCCGCAGTTGTAGCAAAGTTCTTAACCA TAATAAAGGTTGTGAATGTTAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCGCTGACCCAGACAGTGAGGTGGCCACTACGAGTCTCCGGGTGTCACTCATGTGCCCG CTAGGGAAGATGCGCTTGACTGTCCCTTGTCGTGCCCTCACCTGCGCCCACCTGCAGAGC TTCGATGCTGCCCTTTATCTACAGATGAATGAGAAGAAGCCAACATGGACGTGTCCTGTG TGTGACAAGAAGGCTCCCTATGAATCTCTTATCATTGATGGGTTATTTATGGAGATTCTT AATTCCTGCTCGGATTGTGATGAGATCCAATTCATGGAAGACGGATCCTGGTGCCCAATG AAACCCAAAAAGGAGGCATCTGAGGTTTGCCCCCCGCCAGGGTATGGGCTGGATGGCCTC CAGTATAGCCCAGTGCAAGAAGGCAATTCATCAGATAATAAAAAGAAGGTTGAAGTTATT GACTTGACAATAGAAAGCTCATCAGACGAGGAGGACCTACCCCCGACCAAGAAGCACTGT CCTGTCACCTCAGCTGCTATCCCGGCTCTACCTGGAAGCAAAGGAGTCCTGACATCGGGT CACCAGCCATCTTCGGTGCTACGGAGCCCTGCTATGGGCACGCTGGGCGGGGACTTCCTG TCCAGCCTCCCCCTACATGAGTACCCACCTGCCTTCCCACTGGGGGCTGATATCCAAGGT TTAGATTTATTTTCTTTCCTTCAGACTGAGAGTCAGCACTATGGCCCCTCCGTCATCACG TCGCTAGATGAACAGGATGCCCTTGGTCACTTCTTCCAGTACCGAGGGACCCCTTCCCAC TTCCTGGGCCCGCTAGCCCCCACACTGGGGAGCTCTCACCGCAGCACCACTCCAGCACCC CCTCCTGGCCGTGTCAGTAACATTGTGGCCCCTGGGGGGACCTTAAGGGAGGGGCATGGA GGACCCCTGCCCTCTGGGCCCTCTTTGACAGGCTGTCGCTCAGACATCATTTCCCTGGAC TGAGTCCCCTGGATTATGGAACCTTCACTGCCTCCCAACACTGAGCGAGTAATGCTGCAA AGTCTGGACCCCTGGCCGCTCTGACCCCTCAGGGGCCTTTGGTCAAAGGCCAGAAAGACC TTCATGGACACGTGTTTTTGGCCTTATGTCTGCCTGACAAGGCCAGCACCCAAAGGGTTA ATATTTAACCTCTTTTTAAGGACATTTGGGGTCTGTTTTGGGAAATGTCCTTGGATGTCC AGCACATTCCTTTGGGTATGTTAACGTAGGCGGTGGGAGGCAAATGGGATGGGAGGTGAG TTGGGGAAAGGGCTGAGTCCTCAGCCTTGACTGTCGAGAGCCTCATGGGGAAAGGGCCCT TCTAGTGTCCCCCAGGCGCCCTCTCTTCCTGTTCCCCAAAGTGGGCTCTGTTCCTTCCCG TGTCCCATGTCTCTTCATGTCCATTCCATTCTCTTTGGCCAGACAGACAGGTGGAATAAC AGATAGGCAGACCCATGGAACAGAGAACTCTATTTTGGGTTGCAGATTTTTTGTGCATAA ACAAGAGAAACCAAAATACTCCAAAGATGACTTTCCCTGCCTCCTACTTCCTAGTATGAC TGAGGAGGAGACACGGCCTTAGCCCTGACCCCTAGGGGTTGGGGGAAAGGGCCTGGCCAA TTGCCTGGGTCTCTATTTATATATTTAAGTTCACAATGTTGCTTATGCTGACCAAGCCGG GGCCTGAGCTTCTAAAGGCCTGTGGCCCCGTGGCGAGGTCTGGCTCATTCTGCACCTTTC CTGGGAGGTGGGAGTGCCCTCGTGCTCTCCCCGGTCTCCCTTTGCAGGCTCCTCTAGGGC CTAGGGACTATGTTGTAATTTTACTTTATATTCCCGCAGTTGTAGCAAAGTTCTTAACCA TAATAAAGGTTGTGAATGTTAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 694-972, - strand, RNAz p=0.874223 | |
| 1010-1195, - strand, RNAz p=0.991881 | |
| 1499-1617, - strand, RNAz p=0.563892 | |
| 1730-1845, + strand, RNAz p=0.954497 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 694-972, - strand, RNAz p=0.874223 | |
| 1010-1195, - strand, RNAz p=0.991881 | |
| 1499-1617, - strand, RNAz p=0.563892 | |
| 1730-1845, + strand, RNAz p=0.954497 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AL133016, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 7-317, gnl|bosTau2|chr16 (40859688-40859381) | |
| 7-317, gnl|Hg17|chr18 (42678068-42663733) | |
| 7-317, gnl|Mm7|chr18 (77411900-77415859) | |
| 60-223, gnl|bosTau2|chr10 (9936388-9936225) | |
| 60-223, gnl|canFam2|chr30 (35211064-35211239) | |
| 60-223, gnl|danRer3|chr18 (24154012-24154188) | |
| 60-223, gnl|dasNov1|scaffold_139780 (1677-1851) | |
| 60-223, gnl|echTel1|scaffold_308478 (26047-26221) | |
| 60-223, gnl|fr1|chrUn (122272860-122273024) | |
| 60-223, gnl|galGal2|chr10 (19809013-19809181) | |
| 60-223, gnl|hg17|chr15 (66253123-66253297) | |
| 60-223, gnl|Hg17|chr15 (66253123-66253286) | |
| 60-223, gnl|loxAfr1|scaffold_56643 (8588-8414) | |
| 60-223, gnl|mm7|chr9 (62924349-62924174) | |
| 60-223, gnl|Mm7|chr9 (62924347-62924184) | |
| 60-223, gnl|monDom2|scaffold_12 (43963450-43963276) | |
| 60-223, gnl|oryCun1|scaffold_193828 (12869-12694) | |
| 60-223, gnl|panTro1|chr16 (66762782-66762956) | |
| 60-223, gnl|rheMac2|chr7 (46772408-46772582) | |
| 60-223, gnl|rn3|chr8 (67058126-67057951) | |
| 60-223, gnl|tetNig1|chr13 (7745770-7745935) | |
| 60-223, gnl|xenTro1|scaffold_5 (283604-283774) | |
| 355-524, gnl|bosTau2|chr3 (15493026-15493195) | |
| 355-524, gnl|Hg17|chr1 (143073172-143073341) | |
| 355-524, gnl|Mm7|chr3 (96577688-96577857) | |
| 694-1880, gnl|bosTau2|chr3 (15494219-15495393) | |
| 694-1880, gnl|Hg17|chr1 (143074397-143075589) | |
| 694-1880, gnl|Mm7|chr3 (96578796-96579911) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-317, gnl|bosTau2|chr16 (40859688-40859381) | |
| 7-317, gnl|Hg17|chr18 (42678068-42663733) | |
| 7-317, gnl|Mm7|chr18 (77411900-77415859) | |
| 60-223, gnl|bosTau2|chr10 (9936388-9936225) | |
| 60-223, gnl|canFam2|chr30 (35211064-35211239) | |
| 60-223, gnl|danRer3|chr18 (24154012-24154188) | |
| 60-223, gnl|dasNov1|scaffold_139780 (1677-1851) | |
| 60-223, gnl|echTel1|scaffold_308478 (26047-26221) | |
| 60-223, gnl|fr1|chrUn (122272860-122273024) | |
| 60-223, gnl|galGal2|chr10 (19809013-19809181) | |
| 60-223, gnl|hg17|chr15 (66253123-66253297) | |
| 60-223, gnl|Hg17|chr15 (66253123-66253286) | |
| 60-223, gnl|loxAfr1|scaffold_56643 (8588-8414) | |
| 60-223, gnl|mm7|chr9 (62924349-62924174) | |
| 60-223, gnl|Mm7|chr9 (62924347-62924184) | |
| 60-223, gnl|monDom2|scaffold_12 (43963450-43963276) | |
| 60-223, gnl|oryCun1|scaffold_193828 (12869-12694) | |
| 60-223, gnl|panTro1|chr16 (66762782-66762956) | |
| 60-223, gnl|rheMac2|chr7 (46772408-46772582) | |
| 60-223, gnl|rn3|chr8 (67058126-67057951) | |
| 60-223, gnl|tetNig1|chr13 (7745770-7745935) | |
| 60-223, gnl|xenTro1|scaffold_5 (283604-283774) | |
| 355-524, gnl|bosTau2|chr3 (15493026-15493195) | |
| 355-524, gnl|Hg17|chr1 (143073172-143073341) | |
| 355-524, gnl|Mm7|chr3 (96577688-96577857) | |
| 694-1880, gnl|bosTau2|chr3 (15494219-15495393) | |
| 694-1880, gnl|Hg17|chr1 (143074397-143075589) | |
| 694-1880, gnl|Mm7|chr3 (96578796-96579911) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| elu (0.385356) | |
| cga (0.279096) | |
| fce (0.271592) | |
| eep (0.245128) | |
| ece (0.229305) | |
| eye (0.170503) | |
| csp (0.161186) | |
| eli (0.151814) | |
| pla (0.133672) | |
| med (0.116252) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| cga (0.279096) | |
| fce (0.271592) | |
| eep (0.245128) | |
| ece (0.229305) | |
| eye (0.170503) | |
| csp (0.161186) | |
| eli (0.151814) | |
| pla (0.133672) | |
| med (0.116252) |