Non-Coding RNA Search

Ss1.1-Mixn-0024c02.5

Sequence:


               
               GTCACCTCAAAGTCCTCAGCTTACAAGAAGAGGGCCGAGATTATGGACTTCGGCTGCTGA
TCAGCAAATGACTGAATTTTCTAATCCTTCTCCATCTACCTCTGTTAGTGCTGAGGGTAA
AACAGTGAGACAGCCCAGTGTGATTTATTCATGGATTCAGAATAAACGTGAACAGATCAA
GAATTTCTTATCAAAACGGGTGCTGATCATGTATTTTTTCAGTAAGCACCCGGAAGCCTC
CATTCAGGCTGTTTTTTCAGATGCCCAAATGCACATTTGGGCATTAGAAGGTCTGTCTCA
CTTAGTAGCAGCGTCATTTACAGAAGATAGATTTGGAGTTGTCCAGACGACACTACCAGC
CATTCTCAATACTTTGTTGACGCTGCAAGAGGCAGTTGACAAGTACTTCAAGCTTCCTCA
TGCTTCCAGTAAACCACCGCGGATTTCAGGAAGCCTGGTGGACACTTCCTATAAAACATT
AAGGTTTGCCTTTAGAGCATCACTAAAAACTGCTATCTATCGAATAACTACGACATTCGG
TGAACATCTAAATGCTGTGCAAGCATCTGCAGAACATCAGAAAAGACTTCAACAGTTCTT
GGAGTTCAAAGAATAGTTAAGTAATATAAACTGTGTTCATTACACTGCTGATACAACTAC
AGATGGGACAGTAAATGTTCAGCATTCTTGGATCAGAAGAAAATGGACTAATTAGATGCT
TCCTTTGTCGTGGTGGTTGCTTTGAAAACTATACTTTAATGGGAGAAATCATGGAAATTC
TCAGCAGAATAACCAAAAGCTGCCTTTTCTGTACCGATTGCTTTTTGTCTGTGTGGTATA
ATAAAATCTTTATTCAATTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCACCTCAAAGTCCTCAGCTTACAAGAAGAGGGCCGAGATTATGGACTTCGGCTGCTGA
TCAGCAAATGACTGAATTTTCTAATCCTTCTCCATCTACCTCTGTTAGTGCTGAGGGTAA
AACAGTGAGACAGCCCAGTGTGATTTATTCATGGATTCAGAATAAACGTGAACAGATCAA
GAATTTCTTATCAAAACGGGTGCTGATCATGTATTTTTTCAGTAAGCACCCGGAAGCCTC
CATTCAGGCTGTTTTTTCAGATGCCCAAATGCACATTTGGGCATTAGAAGGTCTGTCTCA
CTTAGTAGCAGCGTCATTTACAGAAGATAGATTTGGAGTTGTCCAGACGACACTACCAGC
CATTCTCAATACTTTGTTGACGCTGCAAGAGGCAGTTGACAAGTACTTCAAGCTTCCTCA
TGCTTCCAGTAAACCACCGCGGATTTCAGGAAGCCTGGTGGACACTTCCTATAAAACATT
AAGGTTTGCCTTTAGAGCATCACTAAAAACTGCTATCTATCGAATAACTACGACATTCGG
TGAACATCTAAATGCTGTGCAAGCATCTGCAGAACATCAGAAAAGACTTCAACAGTTCTT
GGAGTTCAAAGAATAGTTAAGTAATATAAACTGTGTTCATTACACTGCTGATACAACTAC
AGATGGGACAGTAAATGTTCAGCATTCTTGGATCAGAAGAAAATGGACTAATTAGATGCT
TCCTTTGTCGTGGTGGTTGCTTTGAAAACTATACTTTAATGGGAGAAATCATGGAAATTC
TCAGCAGAATAACCAAAAGCTGCCTTTTCTGTACCGATTGCTTTTTGTCTGTGTGGTATA
ATAAAATCTTTATTCAATTTTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10434114|dbj|BAB14135.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10434114|dbj|BAB14135.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               553-671, - strand, RNAz p=0.961162

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               553-671, - strand, RNAz p=0.961162

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               59-175, gnl|bosTau2|chr3 (60942034-60941918)
               

               
               59-175, gnl|Hg17|chr1 (53974499-53974383)
               

               
               59-175, gnl|Mm7|chr4 (106766987-106767103)
               


               
               390-552, gnl|bosTau2|chr3 (61825669-61825507)
               

               
               390-552, gnl|Hg17|chr1 (53950185-53950023)
               

               
               390-552, gnl|Mm7|chr4 (106787503-106787665)
               


               
               553-862, gnl|bosTau2|chr3 (61821823-61821510)
               

               
               553-862, gnl|Hg17|chr1 (53945727-53945414)
               

               
               553-862, gnl|Mm7|chr4 (106790465-106790778)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-175, gnl|bosTau2|chr3 (60942034-60941918)
               

               
               59-175, gnl|Hg17|chr1 (53974499-53974383)
               

               
               59-175, gnl|Mm7|chr4 (106766987-106767103)
               


               
               390-552, gnl|bosTau2|chr3 (61825669-61825507)
               

               
               390-552, gnl|Hg17|chr1 (53950185-53950023)
               

               
               390-552, gnl|Mm7|chr4 (106787503-106787665)
               


               
               553-862, gnl|bosTau2|chr3 (61821823-61821510)
               

               
               553-862, gnl|Hg17|chr1 (53945727-53945414)
               

               
               553-862, gnl|Mm7|chr4 (106790465-106790778)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgm (0.180343)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)

	59-175, gnl\|bosTau2\|chr3 (60942034-60941918)
	59-175, gnl\|Hg17\|chr1 (53974499-53974383)
	59-175, gnl\|Mm7\|chr4 (106766987-106767103)

	390-552, gnl\|bosTau2\|chr3 (61825669-61825507)
	390-552, gnl\|Hg17\|chr1 (53950185-53950023)
	390-552, gnl\|Mm7\|chr4 (106787503-106787665)

	553-862, gnl\|bosTau2\|chr3 (61821823-61821510)
	553-862, gnl\|Hg17\|chr1 (53945727-53945414)
	553-862, gnl\|Mm7\|chr4 (106790465-106790778)

	mgm (0.180343)
	spl (0.143184)
	kid (0.129735)
	ova (0.129132)
	bla (0.124347)
	cly (0.120642)