Non-Coding RNA Search

Ss1.1-Mixn-0024c14.5

Sequence:


               
               AAAAAAGTTCTCTTCATTTTAAAAGTTATTTTGGACAGATCTAGTAACTTTCGTTCCTCA
ATCTCTGTGTGCTCTTTGGTAACTTCCCTCCCTTTTTGTCTGAGCAGTGTGAATCGAGAT
ATCCAAGGCTTCTCTTTAGTGCTGCATCTACTACAGCGTAATTAAGTTTAATTTTCACAT
GAATCAAATATCTCTTTACAGTCCACTTGTGCCAAACTCTGACTCGTGCGCTAACAAGAC
GTTTAGTGTGCAGTGTCCTGGAGGGCTCCAGAGCATCTCGGCCTTCTCAGAAGTAAAAGG
TGCCACTTGGTAGCAATGATATTCCAGAATTTAATGGGCTTTTGTTGCCATGGAGACTGC
ATTTAAATAAATGTAGCCTGTAGCTTAAGTTAACTAAACCTAATGCTGCTGTTAAAAACA
GTTTATTTTAATATTAAAATACAGTTGATTAGCAACAGCGGTGCTGTATTTTAAGAGACA
CTTTATTGGAAGTGCAATCATAGTTCTTTGTTTTCACAATTTTACAGTGCATTCTACTTA
CTAATGGGTGCAATTACTTTTAATGGTAAGTGTTTTATAAAATAGAAAAAAAGTGGAGTT
TTCATGAGTTACAGTAAATCCCACAGTTATTAAAAAACTCAATAAAACATCCTGCGCAAC
ATGTTACCGTGCCTTTGCCTAACCTAAATGGATAGTTGCCAGTTAAATAAGTGAATAATT
CAGATTTTGATGTCTCTTCTGAAGTAACTATGCTATATGAATTGCAAAGACCTCCATAAA
ACCACCCATGGCCTTGCCTTTACAGTAAATATAACAACTACATGTTCAATCGGTTTGTTT
GCCTAAATCGCAAATGCTGATGTGTTTTTCTATTGCACAATACTCATTTGCTGTGTGATT
ACTGTTTAGTGTTGGGAAAAAAAATCAACTTCCTAGTTATCAGTGTCTTACTGTGAAGAA
AATACTGGTCTTAGTTGTAATTAAGATACAGTGGTACAGCGTGTAATTAAAACCTAGAGT
AAACTGTTGGAATGACTGTTTTACTTACATATTATCAAAACTAGCATAGCATAAGCAAAA
TAGATATGCAACTCTCCACTTAATATTTTGCCAAATTCTTACCAGAAATCTACAGATACC
AAATTTTCAGAACTGAGTTTGTACAGGCAAGTCCTGGGCTAGGTAAGGGGTTACAGTAGT
TTTGATATCAATATGGATTGTAATTATGTTTTTTGATTACTTTTTTTCCCCAAAAACCCT
GCTTTTGAAATTTTCTTGTACTTTAACTTGGTCTGGCTAGGACATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAGTTCTCTTCATTTTAAAAGTTATTTTGGACAGATCTAGTAACTTTCGTTCCTCA
ATCTCTGTGTGCTCTTTGGTAACTTCCCTCCCTTTTTGTCTGAGCAGTGTGAATCGAGAT
ATCCAAGGCTTCTCTTTAGTGCTGCATCTACTACAGCGTAATTAAGTTTAATTTTCACAT
GAATCAAATATCTCTTTACAGTCCACTTGTGCCAAACTCTGACTCGTGCGCTAACAAGAC
GTTTAGTGTGCAGTGTCCTGGAGGGCTCCAGAGCATCTCGGCCTTCTCAGAAGTAAAAGG
TGCCACTTGGTAGCAATGATATTCCAGAATTTAATGGGCTTTTGTTGCCATGGAGACTGC
ATTTAAATAAATGTAGCCTGTAGCTTAAGTTAACTAAACCTAATGCTGCTGTTAAAAACA
GTTTATTTTAATATTAAAATACAGTTGATTAGCAACAGCGGTGCTGTATTTTAAGAGACA
CTTTATTGGAAGTGCAATCATAGTTCTTTGTTTTCACAATTTTACAGTGCATTCTACTTA
CTAATGGGTGCAATTACTTTTAATGGTAAGTGTTTTATAAAATAGAAAAAAAGTGGAGTT
TTCATGAGTTACAGTAAATCCCACAGTTATTAAAAAACTCAATAAAACATCCTGCGCAAC
ATGTTACCGTGCCTTTGCCTAACCTAAATGGATAGTTGCCAGTTAAATAAGTGAATAATT
CAGATTTTGATGTCTCTTCTGAAGTAACTATGCTATATGAATTGCAAAGACCTCCATAAA
ACCACCCATGGCCTTGCCTTTACAGTAAATATAACAACTACATGTTCAATCGGTTTGTTT
GCCTAAATCGCAAATGCTGATGTGTTTTTCTATTGCACAATACTCATTTGCTGTGTGATT
ACTGTTTAGTGTTGGGAAAAAAAATCAACTTCCTAGTTATCAGTGTCTTACTGTGAAGAA
AATACTGGTCTTAGTTGTAATTAAGATACAGTGGTACAGCGTGTAATTAAAACCTAGAGT
AAACTGTTGGAATGACTGTTTTACTTACATATTATCAAAACTAGCATAGCATAAGCAAAA
TAGATATGCAACTCTCCACTTAATATTTTGCCAAATTCTTACCAGAAATCTACAGATACC
AAATTTTCAGAACTGAGTTTGTACAGGCAAGTCCTGGGCTAGGTAAGGGGTTACAGTAGT
TTTGATATCAATATGGATTGTAATTATGTTTTTTGATTACTTTTTTTCCCCAAAAACCCT
GCTTTTGAAATTTTCTTGTACTTTAACTTGGTCTGGCTAGGACATTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               293-452, + strand, RNAz p=0.754659

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               293-452, + strand, RNAz p=0.754659

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               360-428, + strand, RNAmicro p=0.973233

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               360-428, + strand, RNAmicro p=0.973233

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1308, gnl|bosTau2|chr4 (1295508-1296834)
               

               
               4-1308, gnl|Hg17|chr7 (91673311-91674618)
               

               
               4-1308, gnl|Mm7|chr5 (3698389-3697114)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1308, gnl|bosTau2|chr4 (1295508-1296834)
               

               
               4-1308, gnl|Hg17|chr7 (91673311-91674618)
               

               
               4-1308, gnl|Mm7|chr5 (3698389-3697114)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nlu (0.191681)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	4-1308, gnl\|bosTau2\|chr4 (1295508-1296834)
	4-1308, gnl\|Hg17\|chr7 (91673311-91674618)
	4-1308, gnl\|Mm7\|chr5 (3698389-3697114)

	nlu (0.191681)
	lnt (0.142308)
	csk (0.140746)
	kid (0.129735)
	eru (0.120048)
	ecc (0.115035)
	cty (0.10408)