Ss1.1-Mixn-0024d01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCTGGACTTGATCGAGTCGGACCCTGACGCCTGGTGTGACCTGAGTAAATTTGACCTC CCAGAGGAGCCGTCTGCAGAGGGCAGCGTGGACAGCAGCCCAGGGCAGCCACAACCATTG CAGCAGGAGCAGCAGGCCCCAGCGCCCCGCCAGGCTGCCGCCGCCACCATCATGGTGCCC AGTGTGACCGAGTACCGCCTGGATGGCCACACCATCTCGGACCTGAGCCGGAGCAGCCGG GGCGAGCTGATCCCCATCTCCCCCAGCACTGACGTGGGGGGCTCGGGCCTTGGCACGCCG CCCTCAGTGCTCAAGCGGCAGAAGAAGAGGCGTGTCGCCCTGTCCCCCGTCACGGAGAAC AGCGCCAGCCTGTCCTTCCTGGACTCCTGCAACAGCCTCACCCCGAAGAGCACACCCGTC AAGACCCTGCCCTTCTCGCCCTCCCAGTTTCTGAACTTCTGGAACAAACAGGACACACTG GAGCTGGAAAGCCCGTCGCTGACGTCCACCCCCGTGTGCAGCCAGAAAGTGGTAGTCACT ACACCGCTGCACCGGGACAAGACACCCCTGCACCAGAAACACGCCGCGTTTGTAACCCCA GATCAGAAGTACTCCGTAGACAACACTCCCCACACGCCAACGCCATTCAAGAACGCTCTG GAGAAGTACGGACCACTGAAGCCCCTGCCCCAGACCCCACACCTGGAGGAGGACTTGAAG GAGGTGCTGCGCTCCGAGGCCGGCATTGAGCTCACCATCGAGGATGAAGCCAGGCCCGAG AAGCAGAAGAGGAAGTCTGGGCTGCGGCGGAGCCCCATCAAGAAAGTCCGCAAGTCCCTG GCTCTGGACATCGTGGATGAGGACGTGAAGCTGATGATGTCCACACTGCCAAAGCCTCTG TCCTTGCCGACCAACATCCCACCAAGCTCCTCTGGCTTCACCCCAGACAGCAGCCTGCTC AACGAGGGCTTCCTGCAAGCCAAGCCCGAGAAGCCGGCAGCGCAGAAGTCCCGCGGCCAC TTTCCAGCTCCTGCCCCTATGACCAGCGCCTGGAAGACGGTGGCCTGCGGGGGGACCAGG GACCAGCTCTTCATGCAGGAGAAAGCCCGGCAGCTCCTGGGTCGTGTGAAGCCCAGCCAC ACCTCTCGGACCCTCATCTTGTCCTAGGGACTTGGCCGTCACAAGCCTGTTCTCATGTTT ACAGGGGGCTGGGGGGCCAAGGCAGGGCCGTGAATTTGAGACTCACTCAGATGACCGCCT GCAGGGAGCCTTCTGCCGCCAGCCCCTCCCCAGACTGCTCAGGTGGAGACAGAGCAGGGC CGCCCCCTGTCCTGTCTCCGAGTCCGGCTGCAGCTGCGGGCGGTTCCTGGTGCTAACAGA ACAAAGCCCCACCTCTGAGCTGGCCTGTCCTCCCCACCAGTGCACAGGGAGCCTCGTTAG CTTCACTCCAGCCCTGGTCAGGCCTGACCTCATCTCAGACCTCTGCTTAGGACAGGGGAC GTGGCCAGCATTTCCTTCAACCTGTTGGTACATTTATTTTCTTGAAAGAATAAAATTGCC TTTCTCTTGTGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCTGGACTTGATCGAGTCGGACCCTGACGCCTGGTGTGACCTGAGTAAATTTGACCTC CCAGAGGAGCCGTCTGCAGAGGGCAGCGTGGACAGCAGCCCAGGGCAGCCACAACCATTG CAGCAGGAGCAGCAGGCCCCAGCGCCCCGCCAGGCTGCCGCCGCCACCATCATGGTGCCC AGTGTGACCGAGTACCGCCTGGATGGCCACACCATCTCGGACCTGAGCCGGAGCAGCCGG GGCGAGCTGATCCCCATCTCCCCCAGCACTGACGTGGGGGGCTCGGGCCTTGGCACGCCG CCCTCAGTGCTCAAGCGGCAGAAGAAGAGGCGTGTCGCCCTGTCCCCCGTCACGGAGAAC AGCGCCAGCCTGTCCTTCCTGGACTCCTGCAACAGCCTCACCCCGAAGAGCACACCCGTC AAGACCCTGCCCTTCTCGCCCTCCCAGTTTCTGAACTTCTGGAACAAACAGGACACACTG GAGCTGGAAAGCCCGTCGCTGACGTCCACCCCCGTGTGCAGCCAGAAAGTGGTAGTCACT ACACCGCTGCACCGGGACAAGACACCCCTGCACCAGAAACACGCCGCGTTTGTAACCCCA GATCAGAAGTACTCCGTAGACAACACTCCCCACACGCCAACGCCATTCAAGAACGCTCTG GAGAAGTACGGACCACTGAAGCCCCTGCCCCAGACCCCACACCTGGAGGAGGACTTGAAG GAGGTGCTGCGCTCCGAGGCCGGCATTGAGCTCACCATCGAGGATGAAGCCAGGCCCGAG AAGCAGAAGAGGAAGTCTGGGCTGCGGCGGAGCCCCATCAAGAAAGTCCGCAAGTCCCTG GCTCTGGACATCGTGGATGAGGACGTGAAGCTGATGATGTCCACACTGCCAAAGCCTCTG TCCTTGCCGACCAACATCCCACCAAGCTCCTCTGGCTTCACCCCAGACAGCAGCCTGCTC AACGAGGGCTTCCTGCAAGCCAAGCCCGAGAAGCCGGCAGCGCAGAAGTCCCGCGGCCAC TTTCCAGCTCCTGCCCCTATGACCAGCGCCTGGAAGACGGTGGCCTGCGGGGGGACCAGG GACCAGCTCTTCATGCAGGAGAAAGCCCGGCAGCTCCTGGGTCGTGTGAAGCCCAGCCAC ACCTCTCGGACCCTCATCTTGTCCTAGGGACTTGGCCGTCACAAGCCTGTTCTCATGTTT ACAGGGGGCTGGGGGGCCAAGGCAGGGCCGTGAATTTGAGACTCACTCAGATGACCGCCT GCAGGGAGCCTTCTGCCGCCAGCCCCTCCCCAGACTGCTCAGGTGGAGACAGAGCAGGGC CGCCCCCTGTCCTGTCTCCGAGTCCGGCTGCAGCTGCGGGCGGTTCCTGGTGCTAACAGA ACAAAGCCCCACCTCTGAGCTGGCCTGTCCTCCCCACCAGTGCACAGGGAGCCTCGTTAG CTTCACTCCAGCCCTGGTCAGGCCTGACCTCATCTCAGACCTCTGCTTAGGACAGGGGAC GTGGCCAGCATTTCCTTCAACCTGTTGGTACATTTATTTTCTTGAAAGAATAAAATTGCC TTTCTCTTGTGAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 687-1502, + strand, RNAz p=0.981734 | |
| 1224-1343, - strand, RNAz p=0.754948 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 687-1502, + strand, RNAz p=0.981734 | |
| 1224-1343, - strand, RNAz p=0.754948 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 21-447, gnl|bosTau2|chr13 (52670620-52670209) | |
| 21-447, gnl|Hg17|chr20 (41764543-41764957) | |
| 21-447, gnl|Mm7|chr2 (162815271-162815694) | |
| 682-804, gnl|bosTau2|chr13 (52666933-52666811) | |
| 682-804, gnl|canFam2|chr24 (34350209-34350360) | |
| 682-804, gnl|fr1|chrUn (163454985-163455120) | |
| 682-804, gnl|galGal2|chr20 (3441742-3441597) | |
| 682-804, gnl|hg17|chr20 (41773506-41773662) | |
| 682-804, gnl|Hg17|chr20 (41773536-41773658) | |
| 682-804, gnl|loxAfr1|scaffold_8194 (9286-9129) | |
| 682-804, gnl|mm7|chr2 (162820450-162820604) | |
| 682-804, gnl|Mm7|chr2 (162820478-162820600) | |
| 682-804, gnl|monDom2|scaffold_6 (9778395-9778239) | |
| 682-804, gnl|oryCun1|scaffold_97123 (17495-17647) | |
| 682-804, gnl|panTro1|chr21 (44214197-44214353) | |
| 682-804, gnl|rheMac2|chr10 (20736954-20736798) | |
| 682-804, gnl|rn3|chr3 (153855617-153855771) | |
| 682-804, gnl|xenTro1|scaffold_35 (178229-178348) | |
| 1028-1569, gnl|bosTau2|chr13 (52663343-52662821) | |
| 1028-1569, gnl|canFam2|chr24 (34354239-34354605) | |
| 1028-1569, gnl|echTel1|scaffold_209846 (7500-7884) | |
| 1028-1569, gnl|hg17|chr18 (47302720-47303092) | |
| 1028-1569, gnl|Hg17|chr20 (41778003-41778537) | |
| 1028-1569, gnl|loxAfr1|scaffold_8194 (5169-4830) | |
| 1028-1569, gnl|mm7|chr17 (14901635-14901299) | |
| 1028-1569, gnl|Mm7|chr2 (162824046-162824558) | |
| 1028-1569, gnl|oryCun1|scaffold_173583 (614-911) | |
| 1028-1569, gnl|panTro1|chr17 (43899534-43899906) | |
| 1028-1569, gnl|rheMac2|chr18 (44628256-44628617) | |
| 1028-1569, gnl|rn3|chr3 (153858906-153859235) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-447, gnl|bosTau2|chr13 (52670620-52670209) | |
| 21-447, gnl|Hg17|chr20 (41764543-41764957) | |
| 21-447, gnl|Mm7|chr2 (162815271-162815694) | |
| 682-804, gnl|bosTau2|chr13 (52666933-52666811) | |
| 682-804, gnl|canFam2|chr24 (34350209-34350360) | |
| 682-804, gnl|fr1|chrUn (163454985-163455120) | |
| 682-804, gnl|galGal2|chr20 (3441742-3441597) | |
| 682-804, gnl|hg17|chr20 (41773506-41773662) | |
| 682-804, gnl|Hg17|chr20 (41773536-41773658) | |
| 682-804, gnl|loxAfr1|scaffold_8194 (9286-9129) | |
| 682-804, gnl|mm7|chr2 (162820450-162820604) | |
| 682-804, gnl|Mm7|chr2 (162820478-162820600) | |
| 682-804, gnl|monDom2|scaffold_6 (9778395-9778239) | |
| 682-804, gnl|oryCun1|scaffold_97123 (17495-17647) | |
| 682-804, gnl|panTro1|chr21 (44214197-44214353) | |
| 682-804, gnl|rheMac2|chr10 (20736954-20736798) | |
| 682-804, gnl|rn3|chr3 (153855617-153855771) | |
| 682-804, gnl|xenTro1|scaffold_35 (178229-178348) | |
| 1028-1569, gnl|bosTau2|chr13 (52663343-52662821) | |
| 1028-1569, gnl|canFam2|chr24 (34354239-34354605) | |
| 1028-1569, gnl|echTel1|scaffold_209846 (7500-7884) | |
| 1028-1569, gnl|hg17|chr18 (47302720-47303092) | |
| 1028-1569, gnl|Hg17|chr20 (41778003-41778537) | |
| 1028-1569, gnl|loxAfr1|scaffold_8194 (5169-4830) | |
| 1028-1569, gnl|mm7|chr17 (14901635-14901299) | |
| 1028-1569, gnl|Mm7|chr2 (162824046-162824558) | |
| 1028-1569, gnl|oryCun1|scaffold_173583 (614-911) | |
| 1028-1569, gnl|panTro1|chr17 (43899534-43899906) | |
| 1028-1569, gnl|rheMac2|chr18 (44628256-44628617) | |
| 1028-1569, gnl|rn3|chr3 (153858906-153859235) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| elu (0.385356) | |
| eye (0.170503) | |
| csp (0.161186) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| eru (0.120048) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| eye (0.170503) | |
| csp (0.161186) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| eru (0.120048) |