Non-Coding RNA Search

Ss1.1-Mixn-0024d18.5

Sequence:


               
               GAAGGGCGCCTGGTGTTCGCTCTGCACAGCCAGCGTCTCGGGCTGCTTCAAAGCCTGGGA
CCACGCCGGGGGGCTCTGTGAGGTCCCCAGGAACCCGTGTCGCATGAGCTGCCGGAACCA
CGGACATCTCAACATCAGCACCTGCCACTGCCACTGTCCCCCTGGCTACACAGGCAGATA
CTGCCAAGTGCGGTGCAGCGTGCAGTGTGTGCATGGCCGGTTCCGGGAAGAGGAGTGTTC
CTGCATCTGTGATGTCGGCTATGGGGGAGCCCAGTGTGCCACCAAGGTGCACTTCCCATT
CCACACCTGCGACCTGAGGATCGACGGAGACTGCTTCATGGTGTCCTCGGAGGCAGACAC
CTATTACGGAGCCAAGATGAAATGCCAGGGAAAGGGCGGGGTGCTGGCCCAGATTGAGAG
CCAGAAAGTGCAGGACATCCTCGCCTTCTACCTGGGCCGCCTAGAGACCACCAACGAGGT
GACCGACAGTGACTTTGAGACCAGGAACTTCTGGATCGGGCTCACCTACAAGACTGCTAA
GGACTCCTTCCGCTGGACCACAGGGGAGCACCAGTCCTTCACCAGTTTTGCCTTTGGGCA
GCCTGACAACCAGGGCTTTGGCAACTGTGTGGAGCTGCAGGCATCGGCCGCCTTCAACTG
GAATGATCAACGTTGTAAAACCCGAAACCGCTACATCTGCCAGTTTGCTCGGGAGCACAT
TTCCCGGTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGGCGCCTGGTGTTCGCTCTGCACAGCCAGCGTCTCGGGCTGCTTCAAAGCCTGGGA
CCACGCCGGGGGGCTCTGTGAGGTCCCCAGGAACCCGTGTCGCATGAGCTGCCGGAACCA
CGGACATCTCAACATCAGCACCTGCCACTGCCACTGTCCCCCTGGCTACACAGGCAGATA
CTGCCAAGTGCGGTGCAGCGTGCAGTGTGTGCATGGCCGGTTCCGGGAAGAGGAGTGTTC
CTGCATCTGTGATGTCGGCTATGGGGGAGCCCAGTGTGCCACCAAGGTGCACTTCCCATT
CCACACCTGCGACCTGAGGATCGACGGAGACTGCTTCATGGTGTCCTCGGAGGCAGACAC
CTATTACGGAGCCAAGATGAAATGCCAGGGAAAGGGCGGGGTGCTGGCCCAGATTGAGAG
CCAGAAAGTGCAGGACATCCTCGCCTTCTACCTGGGCCGCCTAGAGACCACCAACGAGGT
GACCGACAGTGACTTTGAGACCAGGAACTTCTGGATCGGGCTCACCTACAAGACTGCTAA
GGACTCCTTCCGCTGGACCACAGGGGAGCACCAGTCCTTCACCAGTTTTGCCTTTGGGCA
GCCTGACAACCAGGGCTTTGGCAACTGTGTGGAGCTGCAGGCATCGGCCGCCTTCAACTG
GAATGATCAACGTTGTAAAACCCGAAACCGCTACATCTGCCAGTTTGCTCGGGAGCACAT
TTCCCGGTGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50801414|ref|XP_424170.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50801414|ref|XP_424170.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               402-519, - strand, RNAz p=0.936396

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-519, - strand, RNAz p=0.936396

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               80-197, gnl|bosTau2|chr18 (683368-683250)
               

               
               80-197, gnl|canFam2|chr5 (79270084-79270273)
               

               
               80-197, gnl|dasNov1|scaffold_124124 (2070-1884)
               

               
               80-197, gnl|echTel1|scaffold_287597 (83810-83621)
               

               
               80-197, gnl|fr1|chrUn (288934107-288934270)
               

               
               80-197, gnl|galGal2|chrUn (157468025-157468203)
               

               
               80-197, gnl|hg17|chr16 (68773981-68774171)
               

               
               80-197, gnl|Hg17|chr16 (73004280-73004163)
               

               
               80-197, gnl|loxAfr1|scaffold_16585 (25280-25473)
               

               
               80-197, gnl|mm7|chr8 (109675491-109675313)
               

               
               80-197, gnl|Mm7|chr8 (109675432-109675317)
               

               
               80-197, gnl|monDom2|scaffold_63 (9849897-9849681)
               

               
               80-197, gnl|panTro1|chr18 (63121804-63121994)
               

               
               80-197, gnl|rheMac2|chr20 (72450753-72450563)
               

               
               80-197, gnl|rn3|chr19 (41002236-41002055)
               

               
               80-197, gnl|tetNig1|chrUn_random (99956244-99956103)
               


               
               386-519, gnl|bosTau2|chr18 (682042-681909)
               

               
               386-519, gnl|Hg17|chr16 (73002436-73002303)
               

               
               386-519, gnl|Mm7|chr8 (109672294-109672161)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-197, gnl|bosTau2|chr18 (683368-683250)
               

               
               80-197, gnl|canFam2|chr5 (79270084-79270273)
               

               
               80-197, gnl|dasNov1|scaffold_124124 (2070-1884)
               

               
               80-197, gnl|echTel1|scaffold_287597 (83810-83621)
               

               
               80-197, gnl|fr1|chrUn (288934107-288934270)
               

               
               80-197, gnl|galGal2|chrUn (157468025-157468203)
               

               
               80-197, gnl|hg17|chr16 (68773981-68774171)
               

               
               80-197, gnl|Hg17|chr16 (73004280-73004163)
               

               
               80-197, gnl|loxAfr1|scaffold_16585 (25280-25473)
               

               
               80-197, gnl|mm7|chr8 (109675491-109675313)
               

               
               80-197, gnl|Mm7|chr8 (109675432-109675317)
               

               
               80-197, gnl|monDom2|scaffold_63 (9849897-9849681)
               

               
               80-197, gnl|panTro1|chr18 (63121804-63121994)
               

               
               80-197, gnl|rheMac2|chr20 (72450753-72450563)
               

               
               80-197, gnl|rn3|chr19 (41002236-41002055)
               

               
               80-197, gnl|tetNig1|chrUn_random (99956244-99956103)
               


               
               386-519, gnl|bosTau2|chr18 (682042-681909)
               

               
               386-519, gnl|Hg17|chr16 (73002436-73002303)
               

               
               386-519, gnl|Mm7|chr8 (109672294-109672161)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	80-197, gnl\|bosTau2\|chr18 (683368-683250)
	80-197, gnl\|canFam2\|chr5 (79270084-79270273)
	80-197, gnl\|dasNov1\|scaffold_124124 (2070-1884)
	80-197, gnl\|echTel1\|scaffold_287597 (83810-83621)
	80-197, gnl\|fr1\|chrUn (288934107-288934270)
	80-197, gnl\|galGal2\|chrUn (157468025-157468203)
	80-197, gnl\|hg17\|chr16 (68773981-68774171)
	80-197, gnl\|Hg17\|chr16 (73004280-73004163)
	80-197, gnl\|loxAfr1\|scaffold_16585 (25280-25473)
	80-197, gnl\|mm7\|chr8 (109675491-109675313)
	80-197, gnl\|Mm7\|chr8 (109675432-109675317)
	80-197, gnl\|monDom2\|scaffold_63 (9849897-9849681)
	80-197, gnl\|panTro1\|chr18 (63121804-63121994)
	80-197, gnl\|rheMac2\|chr20 (72450753-72450563)
	80-197, gnl\|rn3\|chr19 (41002236-41002055)
	80-197, gnl\|tetNig1\|chrUn_random (99956244-99956103)

	386-519, gnl\|bosTau2\|chr18 (682042-681909)
	386-519, gnl\|Hg17\|chr16 (73002436-73002303)
	386-519, gnl\|Mm7\|chr8 (109672294-109672161)