Ss1.1-Mixn-0024d23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTATGATGCCCAGCGAATTGTGAGTGAATTGCCATGCAGAGGGGTGCAGCTGTATGACAC TCCCTATGAGGAGCAGGACCAAGAGCCAGGAGATGAGACTCCTTCAGGTCGGAAACCTCG ACAGAGTCGGCTGCCCCAGGAGGATGAACGGCCAGCAGATGAGTATGACCAGCCCTGGGA ATGGAAGAAAGACCACATCTCCAAGGCATTTGCAGTGCAGTTTGACAGTCCTGAATGGGA AAGAACTTCAGGGTCAGCCAAGGAGCTCCGGAGACCCCCGCATAGAAGCCCCCAGCCCGC AGAGCGTGTGGACCCGGCCCTGCCCCTGGAAAAACAGCCGTGGTTTCATGGCCCGCTGAG CCGGGCAGATGCCGAGAATCTCCTGTCGCTCTGCAAGGAAGGCAGCTACCTTGTGCGGCT CAGCGAGACCAGCCCCCAAGACTGCTCCTTGTCCCTCAGGAGCAGCCAAGGCTTCCTGCA TCTGAAGTTTGCACGGACCCGAGAGAATCAGTTCGTGCTGGGTCAGCACAGTGGCCCTTT CCCCAGCGTGCCAGAGCTGGTGCTCCATTATAGCTCCCGCCCACTGCCCGTGCAGGGTGC CGAGCATCTGGCCCTGCTGTACCCCGTGGTCTCACAGAGCCCCTAACAGAGAGCCTCAGC CCCTTGCCCTGAGCCTGGAGGACCCAGAATCACTGGCTGCAAATGTTGGAAATCTTTCCA TTCCTGGAGGAGGCTGGATGGAAAGTCTCCCCACCCCTCCAGGCCCTGAGTCTTATTGGA GCTGCTCTGCTCCACCTCCTTCTGGGTCCTGGAGCCCAGAATTGTGTCTTGAAGTCCTCC TCTGGCCTGGAAAATAAATAAGTTATTGTGTGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTATGATGCCCAGCGAATTGTGAGTGAATTGCCATGCAGAGGGGTGCAGCTGTATGACAC TCCCTATGAGGAGCAGGACCAAGAGCCAGGAGATGAGACTCCTTCAGGTCGGAAACCTCG ACAGAGTCGGCTGCCCCAGGAGGATGAACGGCCAGCAGATGAGTATGACCAGCCCTGGGA ATGGAAGAAAGACCACATCTCCAAGGCATTTGCAGTGCAGTTTGACAGTCCTGAATGGGA AAGAACTTCAGGGTCAGCCAAGGAGCTCCGGAGACCCCCGCATAGAAGCCCCCAGCCCGC AGAGCGTGTGGACCCGGCCCTGCCCCTGGAAAAACAGCCGTGGTTTCATGGCCCGCTGAG CCGGGCAGATGCCGAGAATCTCCTGTCGCTCTGCAAGGAAGGCAGCTACCTTGTGCGGCT CAGCGAGACCAGCCCCCAAGACTGCTCCTTGTCCCTCAGGAGCAGCCAAGGCTTCCTGCA TCTGAAGTTTGCACGGACCCGAGAGAATCAGTTCGTGCTGGGTCAGCACAGTGGCCCTTT CCCCAGCGTGCCAGAGCTGGTGCTCCATTATAGCTCCCGCCCACTGCCCGTGCAGGGTGC CGAGCATCTGGCCCTGCTGTACCCCGTGGTCTCACAGAGCCCCTAACAGAGAGCCTCAGC CCCTTGCCCTGAGCCTGGAGGACCCAGAATCACTGGCTGCAAATGTTGGAAATCTTTCCA TTCCTGGAGGAGGCTGGATGGAAAGTCTCCCCACCCCTCCAGGCCCTGAGTCTTATTGGA GCTGCTCTGCTCCACCTCCTTCTGGGTCCTGGAGCCCAGAATTGTGTCTTGAAGTCCTCC TCTGGCCTGGAAAATAAATAAGTTATTGTGTGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 442-561, - strand, RNAz p=0.820099 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 442-561, - strand, RNAz p=0.820099 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 26-215, gnl|bosTau2|chr7 (15989418-15989607) | |
| 26-215, gnl|Hg17|chr19 (4234050-4234239) | |
| 26-215, gnl|Mm7|chr17 (54132528-54132705) | |
| 442-629, gnl|bosTau2|chr10 (45012418-45012603) | |
| 442-629, gnl|canFam2|chr11 (57218635-57218782) | |
| 442-629, gnl|canFam2|chr30 (14581957-14582169) | |
| 442-629, gnl|danRer3|chr16 (26083707-26083532) | |
| 442-629, gnl|danRer3|chr18 (49774700-49774552) | |
| 442-629, gnl|dasNov1|scaffold_1076 (143762-143975) | |
| 442-629, gnl|dasNov1|scaffold_52515 (1678-1531) | |
| 442-629, gnl|echTel1|scaffold_312864 (3600-3747) | |
| 442-629, gnl|echTel1|scaffold_57195 (1227-1015) | |
| 442-629, gnl|fr1|chrUn (94018767-94018568) | |
| 442-629, gnl|fr1|chrUn (94018766-94018617) | |
| 442-629, gnl|galGal2|chr10 (1798585-1798367) | |
| 442-629, gnl|galGal2|chrZ (23823178-23823032) | |
| 442-629, gnl|hg17|chr15 (43247438-43247650) | |
| 442-629, gnl|Hg17|chr15 (43247639-43247454) | |
| 442-629, gnl|hg17|chr9 (37909819-37909966) | |
| 442-629, gnl|loxAfr1|scaffold_24341 (17130-17277) | |
| 442-629, gnl|loxAfr1|scaffold_54266 (6782-6578) | |
| 442-629, gnl|mm7|chr2 (122090207-122090417) | |
| 442-629, gnl|Mm7|chr2 (122090406-122090223) | |
| 442-629, gnl|mm7|chr4 (45437755-45437902) | |
| 442-629, gnl|monDom2|scaffold_19 (10924675-10924822) | |
| 442-629, gnl|monDom2|scaffold_53 (8831426-8831214) | |
| 442-629, gnl|oryCun1|scaffold_209086 (53963-54153) | |
| 442-629, gnl|oryCun1|scaffold_209086 (53963-54110) | |
| 442-629, gnl|panTro1|chr11 (38641740-38641887) | |
| 442-629, gnl|panTro1|chr16 (43194153-43194365) | |
| 442-629, gnl|rheMac2|chr15 (39496435-39496288) | |
| 442-629, gnl|rheMac2|chr7 (23520794-23521006) | |
| 442-629, gnl|rn3|chr3 (109035413-109035623) | |
| 442-629, gnl|rn3|chr5 (61983959-61984106) | |
| 442-629, gnl|tetNig1|chr10 (8695958-8696101) | |
| 442-629, gnl|tetNig1|chr5 (1800598-1800386) | |
| 442-629, gnl|xenTro1|scaffold_153 (690494-690641) | |
| 442-629, gnl|xenTro1|scaffold_474 (307421-307210) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-215, gnl|bosTau2|chr7 (15989418-15989607) | |
| 26-215, gnl|Hg17|chr19 (4234050-4234239) | |
| 26-215, gnl|Mm7|chr17 (54132528-54132705) | |
| 442-629, gnl|bosTau2|chr10 (45012418-45012603) | |
| 442-629, gnl|canFam2|chr11 (57218635-57218782) | |
| 442-629, gnl|canFam2|chr30 (14581957-14582169) | |
| 442-629, gnl|danRer3|chr16 (26083707-26083532) | |
| 442-629, gnl|danRer3|chr18 (49774700-49774552) | |
| 442-629, gnl|dasNov1|scaffold_1076 (143762-143975) | |
| 442-629, gnl|dasNov1|scaffold_52515 (1678-1531) | |
| 442-629, gnl|echTel1|scaffold_312864 (3600-3747) | |
| 442-629, gnl|echTel1|scaffold_57195 (1227-1015) | |
| 442-629, gnl|fr1|chrUn (94018767-94018568) | |
| 442-629, gnl|fr1|chrUn (94018766-94018617) | |
| 442-629, gnl|galGal2|chr10 (1798585-1798367) | |
| 442-629, gnl|galGal2|chrZ (23823178-23823032) | |
| 442-629, gnl|hg17|chr15 (43247438-43247650) | |
| 442-629, gnl|Hg17|chr15 (43247639-43247454) | |
| 442-629, gnl|hg17|chr9 (37909819-37909966) | |
| 442-629, gnl|loxAfr1|scaffold_24341 (17130-17277) | |
| 442-629, gnl|loxAfr1|scaffold_54266 (6782-6578) | |
| 442-629, gnl|mm7|chr2 (122090207-122090417) | |
| 442-629, gnl|Mm7|chr2 (122090406-122090223) | |
| 442-629, gnl|mm7|chr4 (45437755-45437902) | |
| 442-629, gnl|monDom2|scaffold_19 (10924675-10924822) | |
| 442-629, gnl|monDom2|scaffold_53 (8831426-8831214) | |
| 442-629, gnl|oryCun1|scaffold_209086 (53963-54153) | |
| 442-629, gnl|oryCun1|scaffold_209086 (53963-54110) | |
| 442-629, gnl|panTro1|chr11 (38641740-38641887) | |
| 442-629, gnl|panTro1|chr16 (43194153-43194365) | |
| 442-629, gnl|rheMac2|chr15 (39496435-39496288) | |
| 442-629, gnl|rheMac2|chr7 (23520794-23521006) | |
| 442-629, gnl|rn3|chr3 (109035413-109035623) | |
| 442-629, gnl|rn3|chr5 (61983959-61984106) | |
| 442-629, gnl|tetNig1|chr10 (8695958-8696101) | |
| 442-629, gnl|tetNig1|chr5 (1800598-1800386) | |
| 442-629, gnl|xenTro1|scaffold_153 (690494-690641) | |
| 442-629, gnl|xenTro1|scaffold_474 (307421-307210) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| hyp (0.142837) | |
| med (0.116252) |