Non-Coding RNA Search

Ss1.1-Mixn-0024e20.5

Sequence:


               
               GGCCCGCCTTGGGCGGCCAGGTACGTAGGTCGGCAGCCTGCCTCGCGCTGCGGTGGAAGT
GGGTGGGCGCGCCGTCAGAGCAAGGGTGCAGGAGGGACCCGAAACCCCAGGTCCACTTAG
GGCCCGTCGTTGTGCGAAGCTGCCACGTCTGAGCCCCGGGGGCCGACCCGCGCAGGGAAT
GTCGCCATGTGACCTCGGCCAGGACACCCCCTCCCAAGCTCTCATCCTGTTCATGAACGC
CGCCTGGTCCTTGTGAGCACCGTCGCGGCAGGAAGCCCAGAGCTGCGCCCACCCCTTCGA
AGGGGAAGGGGTTAGAGTGGGCGCATTTTAACTTGCGATTTGAGGTCTGTCGTTGCTGCC
CTTCAGCGTGAGCACCCAGGATGGGCACCCCCGCCTCTGTGGTGAGTGAGCCGCCCCCCT
GGCAGGCCCCGACAGAGGCCCGGGGCCGCAAGCAGGCCTCAGCCAACATCTTCCAGGATG
CCGAACTGCTGCAGATCCAGGGCCTGTTTCAGCGCAGCGGGGATCAGCTGGCAGAGGAAC
GGGCGCAGATCATCTGGGAGTGCGCAGGGGACCAGCGCGTGGCGGAGGCCTTGAAGAGGC
TGCGCAGGAAGAGGCCTCCTCGGCAGAAGCCCTTGGACCACTCGCTGCACCACTGCAGCC
GGCTCAGAATCCCAGAGCCCCACGCTCCACTGGCCAACCCTCAGAGCAGTGCCACGGAGA
CGGCTTCCAGCGAGCAGTATCTGAACTCTCGGAGGACCAGTGCCAGGATCCGCCGGAACT
GGGGGAAGCCGGGTCCCACAGGCTACCTCCATCAGATCAGACACTGAGCCGGGGAAGGGG
CTGGAGACAGCTCTATCTTCCCCAGGATTCACAGGGACTTTTGCCAAAGGGCCTGAAGAG
GTGAAGAATTCTTGGAAGAGAGTTGAGGCAGACAGCCCCACTCAAGTAAATGCAACCCTG
TGGCCACTGGTCTGCTTGAGTCAGAACAGGACTGGAGGCTTCCACTGAGCTGCTAGGTGG
GACCCATTCCTCACCAGACTGAGGAAGAACGGTGACAGTTGCTGCCTCAGCCCTTCCCAG
TTTAACACTATACCTGGGCTGCATGATATTCCCCTGGGAGTCAAGTGACAGACAGCATCT
CAACACTCCTGCTACTAACCCTCCTGCTACTACAGTACCCCATGGTCCAGCAGCCTGTCC
CACACCCCTTAAAATGTGGTTGAAGTGGCAAAATAAAACCATTTGCATCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCGCCTTGGGCGGCCAGGTACGTAGGTCGGCAGCCTGCCTCGCGCTGCGGTGGAAGT
GGGTGGGCGCGCCGTCAGAGCAAGGGTGCAGGAGGGACCCGAAACCCCAGGTCCACTTAG
GGCCCGTCGTTGTGCGAAGCTGCCACGTCTGAGCCCCGGGGGCCGACCCGCGCAGGGAAT
GTCGCCATGTGACCTCGGCCAGGACACCCCCTCCCAAGCTCTCATCCTGTTCATGAACGC
CGCCTGGTCCTTGTGAGCACCGTCGCGGCAGGAAGCCCAGAGCTGCGCCCACCCCTTCGA
AGGGGAAGGGGTTAGAGTGGGCGCATTTTAACTTGCGATTTGAGGTCTGTCGTTGCTGCC
CTTCAGCGTGAGCACCCAGGATGGGCACCCCCGCCTCTGTGGTGAGTGAGCCGCCCCCCT
GGCAGGCCCCGACAGAGGCCCGGGGCCGCAAGCAGGCCTCAGCCAACATCTTCCAGGATG
CCGAACTGCTGCAGATCCAGGGCCTGTTTCAGCGCAGCGGGGATCAGCTGGCAGAGGAAC
GGGCGCAGATCATCTGGGAGTGCGCAGGGGACCAGCGCGTGGCGGAGGCCTTGAAGAGGC
TGCGCAGGAAGAGGCCTCCTCGGCAGAAGCCCTTGGACCACTCGCTGCACCACTGCAGCC
GGCTCAGAATCCCAGAGCCCCACGCTCCACTGGCCAACCCTCAGAGCAGTGCCACGGAGA
CGGCTTCCAGCGAGCAGTATCTGAACTCTCGGAGGACCAGTGCCAGGATCCGCCGGAACT
GGGGGAAGCCGGGTCCCACAGGCTACCTCCATCAGATCAGACACTGAGCCGGGGAAGGGG
CTGGAGACAGCTCTATCTTCCCCAGGATTCACAGGGACTTTTGCCAAAGGGCCTGAAGAG
GTGAAGAATTCTTGGAAGAGAGTTGAGGCAGACAGCCCCACTCAAGTAAATGCAACCCTG
TGGCCACTGGTCTGCTTGAGTCAGAACAGGACTGGAGGCTTCCACTGAGCTGCTAGGTGG
GACCCATTCCTCACCAGACTGAGGAAGAACGGTGACAGTTGCTGCCTCAGCCCTTCCCAG
TTTAACACTATACCTGGGCTGCATGATATTCCCCTGGGAGTCAAGTGACAGACAGCATCT
CAACACTCCTGCTACTAACCCTCCTGCTACTACAGTACCCCATGGTCCAGCAGCCTGTCC
CACACCCCTTAAAATGTGGTTGAAGTGGCAAAATAAAACCATTTGCATCAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R8D4_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R8D4_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               778-908, + strand, RNAz p=0.998968

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               778-908, + strand, RNAz p=0.998968

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-370, gnl|bosTau2|chr26 (10439253-10439631)
               

               
               1-370, gnl|Hg17|chr10 (99436909-99436513)
               

               
               1-370, gnl|Mm7|chr19 (42022765-42022359)
               


               
               371-667, gnl|bosTau2|chr26 (10445518-10445814)
               

               
               371-667, gnl|Hg17|chr10 (99429664-99429366)
               

               
               371-667, gnl|Mm7|chr19 (42018865-42018587)
               


               
               699-908, gnl|bosTau2|chr26 (10446783-10446992)
               

               
               699-908, gnl|Hg17|chr10 (99427741-99427551)
               

               
               699-908, gnl|Mm7|chr19 (42017656-42017456)
               


               
               958-1209, gnl|bosTau2|chr26 (10447016-10447263)
               

               
               958-1209, gnl|Hg17|chr10 (99427502-99427233)
               

               
               958-1209, gnl|Mm7|chr19 (42017419-42017174)
               


               
               964-1191, gnl|bosTau2|chr21 (11214331-11214096)
               

               
               964-1191, gnl|Hg17|chr10 (99427474-99427255)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-370, gnl|bosTau2|chr26 (10439253-10439631)
               

               
               1-370, gnl|Hg17|chr10 (99436909-99436513)
               

               
               1-370, gnl|Mm7|chr19 (42022765-42022359)
               


               
               371-667, gnl|bosTau2|chr26 (10445518-10445814)
               

               
               371-667, gnl|Hg17|chr10 (99429664-99429366)
               

               
               371-667, gnl|Mm7|chr19 (42018865-42018587)
               


               
               699-908, gnl|bosTau2|chr26 (10446783-10446992)
               

               
               699-908, gnl|Hg17|chr10 (99427741-99427551)
               

               
               699-908, gnl|Mm7|chr19 (42017656-42017456)
               


               
               958-1209, gnl|bosTau2|chr26 (10447016-10447263)
               

               
               958-1209, gnl|Hg17|chr10 (99427502-99427233)
               

               
               958-1209, gnl|Mm7|chr19 (42017419-42017174)
               


               
               964-1191, gnl|bosTau2|chr21 (11214331-11214096)
               

               
               964-1191, gnl|Hg17|chr10 (99427474-99427255)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               cov (0.925069)
               

               
               ese (0.506009)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.925069)
               

               
               ese (0.506009)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-370, gnl\|bosTau2\|chr26 (10439253-10439631)
	1-370, gnl\|Hg17\|chr10 (99436909-99436513)
	1-370, gnl\|Mm7\|chr19 (42022765-42022359)

	371-667, gnl\|bosTau2\|chr26 (10445518-10445814)
	371-667, gnl\|Hg17\|chr10 (99429664-99429366)
	371-667, gnl\|Mm7\|chr19 (42018865-42018587)

	699-908, gnl\|bosTau2\|chr26 (10446783-10446992)
	699-908, gnl\|Hg17\|chr10 (99427741-99427551)
	699-908, gnl\|Mm7\|chr19 (42017656-42017456)

	958-1209, gnl\|bosTau2\|chr26 (10447016-10447263)
	958-1209, gnl\|Hg17\|chr10 (99427502-99427233)
	958-1209, gnl\|Mm7\|chr19 (42017419-42017174)

	964-1191, gnl\|bosTau2\|chr21 (11214331-11214096)
	964-1191, gnl\|Hg17\|chr10 (99427474-99427255)

	cov (0.925069)
	ese (0.506009)
	elu (0.385356)
	nep (0.36785)
	ece (0.229305)
	fbs (0.175346)
	duo (0.172801)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	cag (0.151194)
	pla (0.133672)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	cty (0.10408)
	nbm (0.0993246)
	eje (0.0988338)