Ss1.1-Mixn-0024f09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCGGGATCCGAGTGGTAGGGCATGGCGGGGAGCCGGCTGGAAACTGTTGGTAGCATTT TCTCACGGACCCGGGACCTGATTCGGGCTGGAGTGTTGAAAGAGAAGCCCCTCTGGCTTG ACATATATAATGCCTTCCCCCCGATAAGAGAGCCGGTCTTCCGAAGGCCCCGCTTGCGAT ACGGCAAAGCCAAAGCCGCTGTCCAGGACATCTTCTACCACGAGGATCGGATTAGAGCGA AATTTTATTCGGCCTATGGATCCGGTCCAAAAGCTTTTGATCTGTTCAATCCAAACTTCA AGTCCACCTGTCAACGGTTTGTGGAGAAATACATTGAGCTACAGCGACTTGGAGAAACAG ATGAAGAGAAGTTATTTGTGGAAGCAGGGAAGGCTCTATTGGCCGAAGGTGTCACTTTAA GACGAGTAGGAGAAGCAAGGACTCAGCAGGAAGGTAGTCCCATTTCCCGGAAATCTGAGC CCACGGGTATCAAGCCCCAGACTGCGGTGGAAGAGAACCAGCCTTGGAAAGAAGTCCCGC AGGACCAGCCTTTGGAGGCTCCTGAGAAAGAGTCGAAAGGCCTCCCTCCTCCCTGAGAAA CTTGCACACCGCGTGTACCAACGTCCAGACCGGACTCTCTGCATGAATGTGGAACTATTT TAACAGTTGAACTGTGCAAATGTTTCTCGATCTCTAAGGCATCACGTTTGCCGTCTTTCG GGTCCCATTTCTAGGTTGTCATAAAGCTCTGTCTCAGGGTTTGAAAGAAGCAGTTACGTG AACTTTCCTGTTCGGATGGTATTAAATAAAGAATTCCCTGGTGCTTATAAAGTAAATTTA CTTGAAAATGGTAAATAGCATGAAGAAACCTTTATCTGTATTGTTTGGGACTCATTCTGA GTAGGTTTGCTTGGAGTTGTGTGGTCACATTTGATTTCCTGGGATGCTTCCCTTCTCTGG AGCCAGCACACTTTCCCTTCCTTGCCCACGAGGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCGGGATCCGAGTGGTAGGGCATGGCGGGGAGCCGGCTGGAAACTGTTGGTAGCATTT TCTCACGGACCCGGGACCTGATTCGGGCTGGAGTGTTGAAAGAGAAGCCCCTCTGGCTTG ACATATATAATGCCTTCCCCCCGATAAGAGAGCCGGTCTTCCGAAGGCCCCGCTTGCGAT ACGGCAAAGCCAAAGCCGCTGTCCAGGACATCTTCTACCACGAGGATCGGATTAGAGCGA AATTTTATTCGGCCTATGGATCCGGTCCAAAAGCTTTTGATCTGTTCAATCCAAACTTCA AGTCCACCTGTCAACGGTTTGTGGAGAAATACATTGAGCTACAGCGACTTGGAGAAACAG ATGAAGAGAAGTTATTTGTGGAAGCAGGGAAGGCTCTATTGGCCGAAGGTGTCACTTTAA GACGAGTAGGAGAAGCAAGGACTCAGCAGGAAGGTAGTCCCATTTCCCGGAAATCTGAGC CCACGGGTATCAAGCCCCAGACTGCGGTGGAAGAGAACCAGCCTTGGAAAGAAGTCCCGC AGGACCAGCCTTTGGAGGCTCCTGAGAAAGAGTCGAAAGGCCTCCCTCCTCCCTGAGAAA CTTGCACACCGCGTGTACCAACGTCCAGACCGGACTCTCTGCATGAATGTGGAACTATTT TAACAGTTGAACTGTGCAAATGTTTCTCGATCTCTAAGGCATCACGTTTGCCGTCTTTCG GGTCCCATTTCTAGGTTGTCATAAAGCTCTGTCTCAGGGTTTGAAAGAAGCAGTTACGTG AACTTTCCTGTTCGGATGGTATTAAATAAAGAATTCCCTGGTGCTTATAAAGTAAATTTA CTTGAAAATGGTAAATAGCATGAAGAAACCTTTATCTGTATTGTTTGGGACTCATTCTGA GTAGGTTTGCTTGGAGTTGTGTGGTCACATTTGATTTCCTGGGATGCTTCCCTTCTCTGG AGCCAGCACACTTTCCCTTCCTTGCCCACGAGGTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 316-434, + strand, RNAz p=0.538472 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 316-434, + strand, RNAz p=0.538472 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 67-239, gnl|bosTau2|chr19 (2923262-2923434) | |
| 67-239, gnl|canFam2|chr9 (35875868-35876063) | |
| 67-239, gnl|canFam2|chr9 (35876061-35875936) | |
| 67-239, gnl|dasNov1|scaffold_14363 (37458-37657) | |
| 67-239, gnl|dasNov1|scaffold_14363 (37660-37530) | |
| 67-239, gnl|echTel1|scaffold_112220 (232-429) | |
| 67-239, gnl|echTel1|scaffold_288885 (7855-7730) | |
| 67-239, gnl|fr1|chrUn (143835792-143835590) | |
| 67-239, gnl|hg17|chr17 (53281579-53281773) | |
| 67-239, gnl|Hg17|chr17 (53281771-53281599) | |
| 67-239, gnl|hg17|chr7 (44732463-44732609) | |
| 67-239, gnl|loxAfr1|scaffold_22906 (9258-9129) | |
| 67-239, gnl|loxAfr1|scaffold_30720 (7205-7402) | |
| 67-239, gnl|mm7|chr11 (88275291-88275096) | |
| 67-239, gnl|mm7|chr11 (88275089-88275223) | |
| 67-239, gnl|Mm7|chr11 (88275096-88275268) | |
| 67-239, gnl|monDom2|scaffold_56 (5614678-5614480) | |
| 67-239, gnl|oryCun1|scaffold_202803 (94267-94462) | |
| 67-239, gnl|oryCun1|scaffold_202803 (94460-94335) | |
| 67-239, gnl|panTro1|chr19_random (39018493-39018687) | |
| 67-239, gnl|panTro1|chr6 (46229040-46229186) | |
| 67-239, gnl|rheMac2|chr16 (42076226-42076420) | |
| 67-239, gnl|rheMac2|chr3 (81429788-81429642) | |
| 67-239, gnl|rn3|chr10 (76515930-76515737) | |
| 67-239, gnl|rn3|chr10 (76515730-76515843) | |
| 316-443, gnl|bosTau2|chr19 (2926491-2926618) | |
| 316-443, gnl|canFam2|chr9 (35871871-35871754) | |
| 316-443, gnl|dasNov1|scaffold_9434 (42554-42671) | |
| 316-443, gnl|echTel1|scaffold_288885 (7599-7482) | |
| 316-443, gnl|Hg17|chr17 (53273413-53273286) | |
| 316-443, gnl|hg17|chr7 (44733055-44733172) | |
| 316-443, gnl|loxAfr1|scaffold_22906 (8981-8869) | |
| 316-443, gnl|mm7|chr11 (88280022-88280139) | |
| 316-443, gnl|Mm7|chr11 (88280011-88280138) | |
| 316-443, gnl|oryCun1|scaffold_202803 (90364-90247) | |
| 316-443, gnl|panTro1|chr6 (46229630-46229747) | |
| 316-443, gnl|rheMac2|chr3 (81429195-81429078) | |
| 316-443, gnl|rn3|chr10 (76521395-76521512) | |
| 444-922, gnl|bosTau2|chr19 (2926970-2927451) | |
| 444-922, gnl|Hg17|chr17 (53272295-53271814) | |
| 444-922, gnl|Mm7|chr11 (88280519-88280973) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-239, gnl|bosTau2|chr19 (2923262-2923434) | |
| 67-239, gnl|canFam2|chr9 (35875868-35876063) | |
| 67-239, gnl|canFam2|chr9 (35876061-35875936) | |
| 67-239, gnl|dasNov1|scaffold_14363 (37458-37657) | |
| 67-239, gnl|dasNov1|scaffold_14363 (37660-37530) | |
| 67-239, gnl|echTel1|scaffold_112220 (232-429) | |
| 67-239, gnl|echTel1|scaffold_288885 (7855-7730) | |
| 67-239, gnl|fr1|chrUn (143835792-143835590) | |
| 67-239, gnl|hg17|chr17 (53281579-53281773) | |
| 67-239, gnl|Hg17|chr17 (53281771-53281599) | |
| 67-239, gnl|hg17|chr7 (44732463-44732609) | |
| 67-239, gnl|loxAfr1|scaffold_22906 (9258-9129) | |
| 67-239, gnl|loxAfr1|scaffold_30720 (7205-7402) | |
| 67-239, gnl|mm7|chr11 (88275291-88275096) | |
| 67-239, gnl|mm7|chr11 (88275089-88275223) | |
| 67-239, gnl|Mm7|chr11 (88275096-88275268) | |
| 67-239, gnl|monDom2|scaffold_56 (5614678-5614480) | |
| 67-239, gnl|oryCun1|scaffold_202803 (94267-94462) | |
| 67-239, gnl|oryCun1|scaffold_202803 (94460-94335) | |
| 67-239, gnl|panTro1|chr19_random (39018493-39018687) | |
| 67-239, gnl|panTro1|chr6 (46229040-46229186) | |
| 67-239, gnl|rheMac2|chr16 (42076226-42076420) | |
| 67-239, gnl|rheMac2|chr3 (81429788-81429642) | |
| 67-239, gnl|rn3|chr10 (76515930-76515737) | |
| 67-239, gnl|rn3|chr10 (76515730-76515843) | |
| 316-443, gnl|bosTau2|chr19 (2926491-2926618) | |
| 316-443, gnl|canFam2|chr9 (35871871-35871754) | |
| 316-443, gnl|dasNov1|scaffold_9434 (42554-42671) | |
| 316-443, gnl|echTel1|scaffold_288885 (7599-7482) | |
| 316-443, gnl|Hg17|chr17 (53273413-53273286) | |
| 316-443, gnl|hg17|chr7 (44733055-44733172) | |
| 316-443, gnl|loxAfr1|scaffold_22906 (8981-8869) | |
| 316-443, gnl|mm7|chr11 (88280022-88280139) | |
| 316-443, gnl|Mm7|chr11 (88280011-88280138) | |
| 316-443, gnl|oryCun1|scaffold_202803 (90364-90247) | |
| 316-443, gnl|panTro1|chr6 (46229630-46229747) | |
| 316-443, gnl|rheMac2|chr3 (81429195-81429078) | |
| 316-443, gnl|rn3|chr10 (76521395-76521512) | |
| 444-922, gnl|bosTau2|chr19 (2926970-2927451) | |
| 444-922, gnl|Hg17|chr17 (53272295-53271814) | |
| 444-922, gnl|Mm7|chr11 (88280519-88280973) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cag (0.302389) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| cli (0.152812) | |
| ova (0.129132) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| cbl (0.114797) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| cli (0.152812) | |
| ova (0.129132) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| med (0.116252) | |
| cbl (0.114797) |