Non-Coding RNA Search

Ss1.1-Mixn-0024g22.5

Sequence:


               
               GAAGAACAACCCCCCGACGCTGGAGGGCACCTACAGCAAGCCCCTCAAGGAGTTTGTGGA
GGCCTGTCTCAACAAGGAGCCCAGCTTCAGACCTACCGCTAAGGAGCTACTGAAGCACAA
GTTCATTATCCGCAACGCAAAGAAGACATCCTACTTGACCGAGCTCATCGACAGGTACAA
GAGGTGGAAGGCCGAGCAGAGCCACGAAGACTCCAGCTCCGAAGACTCCGACACGGAAAC
GGACACAGATGGCCAGGCATCCGGAGGCAGTGACTCTGGGGACTGGATCTTCACAATCCG
GGAGAAAGATCCGAAGAGTCTTGAGAATGGAGCTCTTCAGCCGTCGGATTTAGAAAGAAA
TAAGATGAAAGACATCCCAAAGAGGCCTTTCTCTCAGTGTTTATCCACAATTATTTCTCC
GCTGTTTGCAGAGCTAAAGGAGAAGAGCCAGGCGTGCGGAGGCAACTTGGGGTCCATCGA
AGAGCTGCGCGGGGCCATCTACCTGGCGGAGGAGGCCTGCCCCGGCATCTCGGACACCAT
GGTGGCCCAGCTGGTGCAGCGGCTGCAGAGGTATTCTCTGAGTGGCGGAGGAACTTCATC
CCACTGAAACTCCTCTGGCGTCTGGAGCTTCGTTTCCCCTTTTCTTCTTCTTCATCCTCC
TCCTCTTAAAAAGTCAACGAGAGCCTCTGCTGCCTCCGCTGAAGAGGTGCGCCCCTGGGG
GCCGTCCCCCCAGGAGGCCGCCTGCCCGGGGCCGCGCGGCCCTTGCCCGCTGGCCTCGGC
GTGATGAAGTCTCCAGGTGGGGGGGTGGGGGGGTCAGCTCCTTCACCCATCCCTTTCTTC
TTCTCGTCTGTAATTTTAACCATAGCGCACATATCAAGGAAAGTGTCTTTCAACACAAGA
ATCAGCCCCGAAGTGTCTGTTTGGGATGATGCTAAGGCAACGGAAGAGACGAAACCTCAG
GTACCCGCTCTCTGTTGATGAGCCCCCCCCCACCCCGGGAGACGGAGACGCGCTCTGGTG
GGTCCGTGTACAGACGTGTATATAGTGTCGTTTTTACGGAGACCCTCTCGGCGCGCATAG
GGATCACTGCGGCCGCCTCGGCCAAGTGCTTTTGTAGATAATGTCAGTGGAGTAAATATT
TGACAGGCCGTGACTCGAGTCTATCGCCTCGCCTTGATTACATGTACATTTGGAATTCTG
TGACCGGTGATTGGGTTTTATTTTGTATCCGCTGGCTTTGCCACTGATAATAATGAAGGC
CCGTCTTAGGGAACACCCCTCTGTTGGTACCTCAGCAAATGCCGGGGCTGCTCTCGTCCG
CCCCCCACCCTCTGGGTCCACGTCGAAGGTGGTTTTCCTTTTCTCATCGATGGTACTATT
GCTCAGTGTTCTCAGCCGGAGCGTGTCTTGCCTCATGAAGCTTTAAATTATTAAGTTTCT
CCCCAATGAAGTGTCCTCGTCTAACATTGGTTTGGGTTCACGCCCCCGCCAGTCCTGCGC
CTGCTGTCCCGTCCTTGCGTATTGATCTTCTGTTGCAGCTTGTAGTGAAATCTGCATATC
ATCCCTCCCGCCTGGAAATGTCTGAATGCTTACACGAATAAATTTGATAACACGCTTACT
TTGCAAACTCTCCTTGGAGCATGACTCTTGAGAGGGCAGGGCACCTGCGGCGTGTGGTGT
CCGTGTGAGTATCCGCAGGAGCAAGTGCCCACACTCACAGTGCGGAATGGCCGGGTCGGC
TCCCTGTGCAGCTTCGAAAATGGTCCTGAGAAGATGTGGGTGAATAGTGCTGGTTCGTGT
AACTGCTCTGTGTCTTCCCAGGCGCCTCGGCGGAGGCTTGTTCTGCTTTCTTAAAGGAGC
CGGTGTCAGCTGGTTGGCCAGCCAGGGATCTGGGTTCTTCTTGGCTTGCGGCACGGGCTT
GCTTGCCAGGGGCTTAATGATCTCTGGTGTCTGGGAAGAGCGGGAGTTCTCAGAGCAGTT
CTGGGCTCATTTGAGTAGGTGTGGCATCCTTGTGTGTGTGTCGCTGTGAAGCACTGTCAT
CTCTTTGGGGAGGAGCAGTCCTCGAGGCGGGGACACAGAGGCTTTGCGGAAGCAGGGAAG
TTACGGGGTCAGCCTGGGGGCGGAAGGCCAGTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAACAACCCCCCGACGCTGGAGGGCACCTACAGCAAGCCCCTCAAGGAGTTTGTGGA
GGCCTGTCTCAACAAGGAGCCCAGCTTCAGACCTACCGCTAAGGAGCTACTGAAGCACAA
GTTCATTATCCGCAACGCAAAGAAGACATCCTACTTGACCGAGCTCATCGACAGGTACAA
GAGGTGGAAGGCCGAGCAGAGCCACGAAGACTCCAGCTCCGAAGACTCCGACACGGAAAC
GGACACAGATGGCCAGGCATCCGGAGGCAGTGACTCTGGGGACTGGATCTTCACAATCCG
GGAGAAAGATCCGAAGAGTCTTGAGAATGGAGCTCTTCAGCCGTCGGATTTAGAAAGAAA
TAAGATGAAAGACATCCCAAAGAGGCCTTTCTCTCAGTGTTTATCCACAATTATTTCTCC
GCTGTTTGCAGAGCTAAAGGAGAAGAGCCAGGCGTGCGGAGGCAACTTGGGGTCCATCGA
AGAGCTGCGCGGGGCCATCTACCTGGCGGAGGAGGCCTGCCCCGGCATCTCGGACACCAT
GGTGGCCCAGCTGGTGCAGCGGCTGCAGAGGTATTCTCTGAGTGGCGGAGGAACTTCATC
CCACTGAAACTCCTCTGGCGTCTGGAGCTTCGTTTCCCCTTTTCTTCTTCTTCATCCTCC
TCCTCTTAAAAAGTCAACGAGAGCCTCTGCTGCCTCCGCTGAAGAGGTGCGCCCCTGGGG
GCCGTCCCCCCAGGAGGCCGCCTGCCCGGGGCCGCGCGGCCCTTGCCCGCTGGCCTCGGC
GTGATGAAGTCTCCAGGTGGGGGGGTGGGGGGGTCAGCTCCTTCACCCATCCCTTTCTTC
TTCTCGTCTGTAATTTTAACCATAGCGCACATATCAAGGAAAGTGTCTTTCAACACAAGA
ATCAGCCCCGAAGTGTCTGTTTGGGATGATGCTAAGGCAACGGAAGAGACGAAACCTCAG
GTACCCGCTCTCTGTTGATGAGCCCCCCCCCACCCCGGGAGACGGAGACGCGCTCTGGTG
GGTCCGTGTACAGACGTGTATATAGTGTCGTTTTTACGGAGACCCTCTCGGCGCGCATAG
GGATCACTGCGGCCGCCTCGGCCAAGTGCTTTTGTAGATAATGTCAGTGGAGTAAATATT
TGACAGGCCGTGACTCGAGTCTATCGCCTCGCCTTGATTACATGTACATTTGGAATTCTG
TGACCGGTGATTGGGTTTTATTTTGTATCCGCTGGCTTTGCCACTGATAATAATGAAGGC
CCGTCTTAGGGAACACCCCTCTGTTGGTACCTCAGCAAATGCCGGGGCTGCTCTCGTCCG
CCCCCCACCCTCTGGGTCCACGTCGAAGGTGGTTTTCCTTTTCTCATCGATGGTACTATT
GCTCAGTGTTCTCAGCCGGAGCGTGTCTTGCCTCATGAAGCTTTAAATTATTAAGTTTCT
CCCCAATGAAGTGTCCTCGTCTAACATTGGTTTGGGTTCACGCCCCCGCCAGTCCTGCGC
CTGCTGTCCCGTCCTTGCGTATTGATCTTCTGTTGCAGCTTGTAGTGAAATCTGCATATC
ATCCCTCCCGCCTGGAAATGTCTGAATGCTTACACGAATAAATTTGATAACACGCTTACT
TTGCAAACTCTCCTTGGAGCATGACTCTTGAGAGGGCAGGGCACCTGCGGCGTGTGGTGT
CCGTGTGAGTATCCGCAGGAGCAAGTGCCCACACTCACAGTGCGGAATGGCCGGGTCGGC
TCCCTGTGCAGCTTCGAAAATGGTCCTGAGAAGATGTGGGTGAATAGTGCTGGTTCGTGT
AACTGCTCTGTGTCTTCCCAGGCGCCTCGGCGGAGGCTTGTTCTGCTTTCTTAAAGGAGC
CGGTGTCAGCTGGTTGGCCAGCCAGGGATCTGGGTTCTTCTTGGCTTGCGGCACGGGCTT
GCTTGCCAGGGGCTTAATGATCTCTGGTGTCTGGGAAGAGCGGGAGTTCTCAGAGCAGTT
CTGGGCTCATTTGAGTAGGTGTGGCATCCTTGTGTGTGTGTCGCTGTGAAGCACTGTCAT
CTCTTTGGGGAGGAGCAGTCCTCGAGGCGGGGACACAGAGGCTTTGCGGAAGCAGGGAAG
TTACGGGGTCAGCCTGGGGGCGGAAGGCCAGTTGTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5JV99_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5JV99_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               631-742, + strand, RNAz p=0.999393

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               631-742, + strand, RNAz p=0.999393

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-994, gnl|bosTau2|chr12 (42347109-42348110)
               

               
               2-994, gnl|Hg17|chrX (135103961-135102991)
               

               
               2-994, gnl|Mm7|chr14 (115701612-115691352)
               


               
               1357-1561, gnl|bosTau2|chr1 (19002890-19002681)
               

               
               1357-1561, gnl|Hg17|chr13 (97902678-97902473)
               

               
               1357-1561, gnl|Mm7|chr14 (115690983-115690781)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-994, gnl|bosTau2|chr12 (42347109-42348110)
               

               
               2-994, gnl|Hg17|chrX (135103961-135102991)
               

               
               2-994, gnl|Mm7|chr14 (115701612-115691352)
               


               
               1357-1561, gnl|bosTau2|chr1 (19002890-19002681)
               

               
               1357-1561, gnl|Hg17|chr13 (97902678-97902473)
               

               
               1357-1561, gnl|Mm7|chr14 (115690983-115690781)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               pla (0.802032)
               

               
               isp (0.300752)
               

               
               cga (0.279096)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.802032)
               

               
               isp (0.300752)
               

               
               cga (0.279096)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	2-994, gnl\|bosTau2\|chr12 (42347109-42348110)
	2-994, gnl\|Hg17\|chrX (135103961-135102991)
	2-994, gnl\|Mm7\|chr14 (115701612-115691352)

	1357-1561, gnl\|bosTau2\|chr1 (19002890-19002681)
	1357-1561, gnl\|Hg17\|chr13 (97902678-97902473)
	1357-1561, gnl\|Mm7\|chr14 (115690983-115690781)

	pla (0.802032)
	isp (0.300752)
	cga (0.279096)
	med (0.232504)
	nep (0.183925)
	ton (0.1755)
	cje (0.165235)
	hyp (0.142837)
	lnt (0.142308)
	hlv (0.139256)
	che (0.136314)
	ute (0.132784)
	cly (0.120642)
	jej (0.0989218)