Non-Coding RNA Search

Ss1.1-Mixn-0024h03.5

Sequence:


               
               CCCACGCGTCCGGAAGAAGGACAAGAGGAGGAGGAGGAAGGGGAGTCCAAGGCTGACGAT
CCCTACGCTCACCTTAGCAAGAAGGAGAAGAAGAAGCTGAAGAAACAGATGGAGTATGAG
CGCCAGGTGGCTTCATTAAAAGCAGCCAATGCTGCTGAAAATGACTTCTCCGTGTCACAA
GCAGAGATGTCTTCCCGCCAGGCCATGTTGGAAAATGCATCTGACATCAAGCTGGAGAAG
TTCAGCATCTCGGCCCACGGCAAGGAGCTCTTCGTCAACGCAGACCTGTACATTGTCGCC
GGCCGCCGCTACGGGCTGGTGGGACCCAATGGCAAGGGCAAGACCACGCTCCTCAAGCAC
ATCGCCAACCGAGCCCTGAGCATCCCTCCCAACATCGACGTGCTGCTGTGCGAGCAGGAG
GTGGTGGCTGATGAGACGCCAGCTGTGCAGGCTGTTCTTCGAGCTGACACCAAGCGGCTG
AAGCTGCTGGAAGAGGAGCGGCGGCTCCAGGGACAATTGGAACAGGGCGATGACACGGCC
GCCGACAGGCTGGAGAAGGTGTATGAGGAGTTGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGCGTCCGGAAGAAGGACAAGAGGAGGAGGAGGAAGGGGAGTCCAAGGCTGACGAT
CCCTACGCTCACCTTAGCAAGAAGGAGAAGAAGAAGCTGAAGAAACAGATGGAGTATGAG
CGCCAGGTGGCTTCATTAAAAGCAGCCAATGCTGCTGAAAATGACTTCTCCGTGTCACAA
GCAGAGATGTCTTCCCGCCAGGCCATGTTGGAAAATGCATCTGACATCAAGCTGGAGAAG
TTCAGCATCTCGGCCCACGGCAAGGAGCTCTTCGTCAACGCAGACCTGTACATTGTCGCC
GGCCGCCGCTACGGGCTGGTGGGACCCAATGGCAAGGGCAAGACCACGCTCCTCAAGCAC
ATCGCCAACCGAGCCCTGAGCATCCCTCCCAACATCGACGTGCTGCTGTGCGAGCAGGAG
GTGGTGGCTGATGAGACGCCAGCTGTGCAGGCTGTTCTTCGAGCTGACACCAAGCGGCTG
AAGCTGCTGGAAGAGGAGCGGCGGCTCCAGGGACAATTGGAACAGGGCGATGACACGGCC
GCCGACAGGCTGGAGAAGGTGTATGAGGAGTTGCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47196118|emb|CAF87490.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47196118|emb|CAF87490.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               106-231, + strand, RNAz p=0.954005
               

               
               134-231, + strand, RNAz p=0.634121
               

               
               418-567, + strand, RNAz p=0.692568

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-231, + strand, RNAz p=0.954005
               

               
               134-231, + strand, RNAz p=0.634121
               

               
               418-567, + strand, RNAz p=0.692568

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               106-231, gnl|bosTau2|chr23 (20902660-20902535)
               

               
               106-231, gnl|canFam2|chr12 (3407020-3407232)
               

               
               106-231, gnl|danRer3|chr19 (46615008-46615200)
               

               
               106-231, gnl|echTel1|scaffold_315780 (10995-11192)
               

               
               106-231, gnl|fr1|chrUn (71108409-71108205)
               

               
               106-231, gnl|hg17|chr6 (30658766-30658982)
               

               
               106-231, gnl|Hg17|chr6 (30658819-30658944)
               

               
               106-231, gnl|mm7|chr17 (34065886-34065714)
               

               
               106-231, gnl|Mm7|chr17 (34065868-34065743)
               

               
               106-231, gnl|monDom2|scaffold_42 (18730562-18730364)
               

               
               106-231, gnl|oryCun1|scaffold_204107 (38117-38289)
               

               
               106-231, gnl|panTro1|chr5 (31115994-31116210)
               

               
               106-231, gnl|rheMac2|chr4 (30164715-30164931)
               

               
               106-231, gnl|rn3|chr20 (2957523-2957727)
               

               
               106-231, gnl|tetNig1|chrUn_random (69572613-69572774)
               

               
               106-231, gnl|xenTro1|scaffold_547 (712903-713100)
               


               
               418-567, gnl|bosTau2|chr23 (20901592-20901443)
               

               
               418-567, gnl|Hg17|chr6 (30659947-30660096)
               

               
               418-567, gnl|Mm7|chr17 (34064997-34064848)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-231, gnl|bosTau2|chr23 (20902660-20902535)
               

               
               106-231, gnl|canFam2|chr12 (3407020-3407232)
               

               
               106-231, gnl|danRer3|chr19 (46615008-46615200)
               

               
               106-231, gnl|echTel1|scaffold_315780 (10995-11192)
               

               
               106-231, gnl|fr1|chrUn (71108409-71108205)
               

               
               106-231, gnl|hg17|chr6 (30658766-30658982)
               

               
               106-231, gnl|Hg17|chr6 (30658819-30658944)
               

               
               106-231, gnl|mm7|chr17 (34065886-34065714)
               

               
               106-231, gnl|Mm7|chr17 (34065868-34065743)
               

               
               106-231, gnl|monDom2|scaffold_42 (18730562-18730364)
               

               
               106-231, gnl|oryCun1|scaffold_204107 (38117-38289)
               

               
               106-231, gnl|panTro1|chr5 (31115994-31116210)
               

               
               106-231, gnl|rheMac2|chr4 (30164715-30164931)
               

               
               106-231, gnl|rn3|chr20 (2957523-2957727)
               

               
               106-231, gnl|tetNig1|chrUn_random (69572613-69572774)
               

               
               106-231, gnl|xenTro1|scaffold_547 (712903-713100)
               


               
               418-567, gnl|bosTau2|chr23 (20901592-20901443)
               

               
               418-567, gnl|Hg17|chr6 (30659947-30660096)
               

               
               418-567, gnl|Mm7|chr17 (34064997-34064848)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	106-231, + strand, RNAz p=0.954005
	134-231, + strand, RNAz p=0.634121
	418-567, + strand, RNAz p=0.692568

	106-231, gnl\|bosTau2\|chr23 (20902660-20902535)
	106-231, gnl\|canFam2\|chr12 (3407020-3407232)
	106-231, gnl\|danRer3\|chr19 (46615008-46615200)
	106-231, gnl\|echTel1\|scaffold_315780 (10995-11192)
	106-231, gnl\|fr1\|chrUn (71108409-71108205)
	106-231, gnl\|hg17\|chr6 (30658766-30658982)
	106-231, gnl\|Hg17\|chr6 (30658819-30658944)
	106-231, gnl\|mm7\|chr17 (34065886-34065714)
	106-231, gnl\|Mm7\|chr17 (34065868-34065743)
	106-231, gnl\|monDom2\|scaffold_42 (18730562-18730364)
	106-231, gnl\|oryCun1\|scaffold_204107 (38117-38289)
	106-231, gnl\|panTro1\|chr5 (31115994-31116210)
	106-231, gnl\|rheMac2\|chr4 (30164715-30164931)
	106-231, gnl\|rn3\|chr20 (2957523-2957727)
	106-231, gnl\|tetNig1\|chrUn_random (69572613-69572774)
	106-231, gnl\|xenTro1\|scaffold_547 (712903-713100)

	418-567, gnl\|bosTau2\|chr23 (20901592-20901443)
	418-567, gnl\|Hg17\|chr6 (30659947-30660096)
	418-567, gnl\|Mm7\|chr17 (34064997-34064848)