Non-Coding RNA Search

Ss1.1-Mixn-0024h12.5

Sequence:


               
               ATCAACTTCGGCTCATTTACCATCAAGTCAGACGTCTGGTCCTTTGGTATCCTGCTGACG
GAGATCGTTACCTACGGCCGGATCCCTTACCCAGGGATGTCAAACCCTGAGGTGATCCGG
GCACTGGAGCACGGGTACCGGATGCCCCGACCAGAGCACTGCCCAGAGGAGCTCTACAAC
ATCATGACTCGCTGCTGGAAGAACCACCCCGAGGAGCGGCCCACCTTCGAATATATCCAG
AGCGTGCTGGATGACTTCTACACGGCCACCGAGAGCCAGTACCAACAGCAGCCTTGACTG
GGGCGACCAGGGCAGGGCCAGGTGCCAAGGGCACCACCTGCTCAGTGCCCACTCACCCAT
CCCACTCTCAGACACCCACCCTCAGCTGTCAAGAGGGTAGGCTGGACTGGACAATCTCTT
TTTGACTCTAGCGATTCACAATCTGCCATTTTTAAGACACCTCCAGTTGATATTTCTATT
GCCTGGGACAGCGGGATTCTGGTTATAGCTGTGGTTTAGATGGGAAACTTTAACAATAAT
GAAATAAATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAACTTCGGCTCATTTACCATCAAGTCAGACGTCTGGTCCTTTGGTATCCTGCTGACG
GAGATCGTTACCTACGGCCGGATCCCTTACCCAGGGATGTCAAACCCTGAGGTGATCCGG
GCACTGGAGCACGGGTACCGGATGCCCCGACCAGAGCACTGCCCAGAGGAGCTCTACAAC
ATCATGACTCGCTGCTGGAAGAACCACCCCGAGGAGCGGCCCACCTTCGAATATATCCAG
AGCGTGCTGGATGACTTCTACACGGCCACCGAGAGCCAGTACCAACAGCAGCCTTGACTG
GGGCGACCAGGGCAGGGCCAGGTGCCAAGGGCACCACCTGCTCAGTGCCCACTCACCCAT
CCCACTCTCAGACACCCACCCTCAGCTGTCAAGAGGGTAGGCTGGACTGGACAATCTCTT
TTTGACTCTAGCGATTCACAATCTGCCATTTTTAAGACACCTCCAGTTGATATTTCTATT
GCCTGGGACAGCGGGATTCTGGTTATAGCTGTGGTTTAGATGGGAAACTTTAACAATAAT
GAAATAAATATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50784174|ref|XP_427615.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50784174|ref|XP_427615.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               85-552, gnl|bosTau2|chr4 (44043918-44044412)
               

               
               85-552, gnl|Hg17|chr20 (30152772-30153283)
               

               
               85-552, gnl|Mm7|chr2 (152891795-152892262)
               


               
               91-295, gnl|bosTau2|chr14 (11683700-11683496)
               

               
               91-295, gnl|Hg17|chr8 (57085017-57085221)
               

               
               91-295, gnl|Mm7|chr4 (3716885-3717089)
               


               
               92-284, gnl|bosTau2|chr13 (49325955-49325763)
               

               
               92-284, gnl|Hg17|chr20 (35464985-35465177)
               

               
               92-284, gnl|Mm7|chr2 (157210640-157210832)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-552, gnl|bosTau2|chr4 (44043918-44044412)
               

               
               85-552, gnl|Hg17|chr20 (30152772-30153283)
               

               
               85-552, gnl|Mm7|chr2 (152891795-152892262)
               


               
               91-295, gnl|bosTau2|chr14 (11683700-11683496)
               

               
               91-295, gnl|Hg17|chr8 (57085017-57085221)
               

               
               91-295, gnl|Mm7|chr4 (3716885-3717089)
               


               
               92-284, gnl|bosTau2|chr13 (49325955-49325763)
               

               
               92-284, gnl|Hg17|chr20 (35464985-35465177)
               

               
               92-284, gnl|Mm7|chr2 (157210640-157210832)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               csp (0.161186)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	85-552, gnl\|bosTau2\|chr4 (44043918-44044412)
	85-552, gnl\|Hg17\|chr20 (30152772-30153283)
	85-552, gnl\|Mm7\|chr2 (152891795-152892262)

	91-295, gnl\|bosTau2\|chr14 (11683700-11683496)
	91-295, gnl\|Hg17\|chr8 (57085017-57085221)
	91-295, gnl\|Mm7\|chr4 (3716885-3717089)

	92-284, gnl\|bosTau2\|chr13 (49325955-49325763)
	92-284, gnl\|Hg17\|chr20 (35464985-35465177)
	92-284, gnl\|Mm7\|chr2 (157210640-157210832)