Ss1.1-Mixn-0024i05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGTAGCAGGTGATTCTCTGTTCCACAAAGACTGAAGCCACAGGGCCTCTTAGGGGAGA GGGGTTAAAGGAGGTGGGGGTCCCTGGAACGGGAGGGAATGTCTCAGAGAGCTCCTGCAG GCTGGCAAGATGGTGTTAGAAAGCACTATGGTTTGTGTGGACAACAGTGAGTATATGCGG AATGGGGACTTCTTGCCTACCCGGCTGCAGGCTCAACAGGATGCCGTCAACATAGTCTGT CACTCGAAGACCCGCAGCAACCCTGAGAACAACGTGGGCCTCATCACCCTGGCCAATGAC TGTGAAGTGCTGACCACACTCACCCCTGACACCGGCCGCATCCTGTCTAAGCTCCACACT GTCCAACCCAAGGGCAAGATCACGTTCTGCACTGGCATCCGCGTGGCCCATCTGGCCCTG AAGCACCGGCAGGGCAAGAATCACAAGATGCGTATCATTGCCTTCGTGGGAAGCCCTGTG GAGGACAATGAGAAAGATCTGGTGAAATTGGCTAAACGCCTCAAGAAGGAGAAAGTAAAT GTTGACATTATCAATTTTGGGGAAGAGGAGGTGAACACAGAAAAGCTGACTGCCTTCGTA AACACATTGAATGGCAAAGATGGAACCGGTTCTCATCTGGTGACAGTGCCTCCTGGGCCC AGCTTGGCTGATGCCCTCATCAGTTCTCCGATTCTGGCTGGGGAAGGTGGTGCCATGCTG GGTCTTGGTGCCAGTGACTTTGAATTTGGAGTGGATCCCAGTGCTGATCCTGAGCTGGCC CTGGCCCTGCGTGTTTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAGGAGGCGCGGCGG GCAGCTGCCGCCTCTGCCGCGGAGGCCGGGATTGCTACGACTGGGACTGAAGACTCCGAC GATGCCCTGCTGAAGATGACCATCAGCCAGCAGGAGTTTGGCCGCACCGGGCTCCCTGAC CTAAGCAGTATGACCGAGGAAGAACAGATTGCTTATGCCATGCAGATGTCCCTGCAGGGC GCAGAATTCGGCCAGGCAGAATCCGCTGACATTGATGCCAATTCAGCCATGGACACATCT GAGCCTGCCAAGGAGGAGGATGATTATGACGTGATGCAGGACCCCGAGTTCCTTCAGAGT GTCCTTGAGAACCTTCCAGGCGTGGATCCCAACAATGAGGCCATTCGAAATGCCATGGGC TCCCTGGCCTCACAGGCCACCAAGGATGGCAAGAAGGACAAGAAGGAGGAGGACAAGAAG TGAGACTGGAGGGAAAGGGGAGCTGAGCCTGTTTGTGGGGCTGCCTTGTAGGGTGGGGTG GGATATGGGGTTTAGATGTGTTATCTGTAACCGCTGCACCTAAATAAAGCTTGGCAACTT TTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGTAGCAGGTGATTCTCTGTTCCACAAAGACTGAAGCCACAGGGCCTCTTAGGGGAGA GGGGTTAAAGGAGGTGGGGGTCCCTGGAACGGGAGGGAATGTCTCAGAGAGCTCCTGCAG GCTGGCAAGATGGTGTTAGAAAGCACTATGGTTTGTGTGGACAACAGTGAGTATATGCGG AATGGGGACTTCTTGCCTACCCGGCTGCAGGCTCAACAGGATGCCGTCAACATAGTCTGT CACTCGAAGACCCGCAGCAACCCTGAGAACAACGTGGGCCTCATCACCCTGGCCAATGAC TGTGAAGTGCTGACCACACTCACCCCTGACACCGGCCGCATCCTGTCTAAGCTCCACACT GTCCAACCCAAGGGCAAGATCACGTTCTGCACTGGCATCCGCGTGGCCCATCTGGCCCTG AAGCACCGGCAGGGCAAGAATCACAAGATGCGTATCATTGCCTTCGTGGGAAGCCCTGTG GAGGACAATGAGAAAGATCTGGTGAAATTGGCTAAACGCCTCAAGAAGGAGAAAGTAAAT GTTGACATTATCAATTTTGGGGAAGAGGAGGTGAACACAGAAAAGCTGACTGCCTTCGTA AACACATTGAATGGCAAAGATGGAACCGGTTCTCATCTGGTGACAGTGCCTCCTGGGCCC AGCTTGGCTGATGCCCTCATCAGTTCTCCGATTCTGGCTGGGGAAGGTGGTGCCATGCTG GGTCTTGGTGCCAGTGACTTTGAATTTGGAGTGGATCCCAGTGCTGATCCTGAGCTGGCC CTGGCCCTGCGTGTTTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAGGAGGCGCGGCGG GCAGCTGCCGCCTCTGCCGCGGAGGCCGGGATTGCTACGACTGGGACTGAAGACTCCGAC GATGCCCTGCTGAAGATGACCATCAGCCAGCAGGAGTTTGGCCGCACCGGGCTCCCTGAC CTAAGCAGTATGACCGAGGAAGAACAGATTGCTTATGCCATGCAGATGTCCCTGCAGGGC GCAGAATTCGGCCAGGCAGAATCCGCTGACATTGATGCCAATTCAGCCATGGACACATCT GAGCCTGCCAAGGAGGAGGATGATTATGACGTGATGCAGGACCCCGAGTTCCTTCAGAGT GTCCTTGAGAACCTTCCAGGCGTGGATCCCAACAATGAGGCCATTCGAAATGCCATGGGC TCCCTGGCCTCACAGGCCACCAAGGATGGCAAGAAGGACAAGAAGGAGGAGGACAAGAAG TGAGACTGGAGGGAAAGGGGAGCTGAGCCTGTTTGTGGGGCTGCCTTGTAGGGTGGGGTG GGATATGGGGTTTAGATGTGTTATCTGTAACCGCTGCACCTAAATAAAGCTTGGCAACTT TTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 605-1249, - strand, RNAz p=0.989811 | |
| 620-739, + strand, RNAz p=0.840418 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 605-1249, - strand, RNAz p=0.989811 | |
| 620-739, + strand, RNAz p=0.840418 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-296, gnl|bosTau2|chr3 (16310148-16309846) | |
| 1-296, gnl|Hg17|chr1 (148047594-148047850) | |
| 1-296, gnl|Mm7|chr3 (94910815-94910554) | |
| 566-784, gnl|bosTau2|chr3 (16307532-16307314) | |
| 566-784, gnl|canFam2|chr17 (63390468-63390628) | |
| 566-784, gnl|danRer3|chrUn (118747500-118747661) | |
| 566-784, gnl|dasNov1|scaffold_167312 (1724-1884) | |
| 566-784, gnl|echTel1|scaffold_316629 (122560-122402) | |
| 566-784, gnl|fr1|chrUn (156446436-156446595) | |
| 566-784, gnl|galGal2|chrUn (96992435-96992589) | |
| 566-784, gnl|hg17|chr1 (148050922-148051081) | |
| 566-784, gnl|Hg17|chr1 (148050941-148051159) | |
| 566-784, gnl|loxAfr1|scaffold_5758 (7462-7302) | |
| 566-784, gnl|mm7|chr3 (94908753-94908594) | |
| 566-784, gnl|Mm7|chr3 (94908732-94908514) | |
| 566-784, gnl|monDom2|scaffold_44 (4448205-4448362) | |
| 566-784, gnl|oryCun1|scaffold_116432 (846-1005) | |
| 566-784, gnl|panTro1|chr1 (129789454-129789596) | |
| 566-784, gnl|rheMac2|chr1 (129693031-129693190) | |
| 566-784, gnl|rn3|chr2 (189894438-189894279) | |
| 566-784, gnl|tetNig1|chr21_random (2428595-2428433) | |
| 566-784, gnl|xenTro1|scaffold_1732 (94997-94838) | |
| 891-1022, gnl|bosTau2|chr3 (16306530-16306399) | |
| 891-1022, gnl|Hg17|chr1 (148051855-148051986) | |
| 891-1022, gnl|Mm7|chr3 (94907715-94907584) | |
| 1091-1382, gnl|bosTau2|chr3 (16305375-16305077) | |
| 1091-1382, gnl|Hg17|chr1 (148052720-148053009) | |
| 1091-1382, gnl|Mm7|chr3 (94906935-94906653) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-296, gnl|bosTau2|chr3 (16310148-16309846) | |
| 1-296, gnl|Hg17|chr1 (148047594-148047850) | |
| 1-296, gnl|Mm7|chr3 (94910815-94910554) | |
| 566-784, gnl|bosTau2|chr3 (16307532-16307314) | |
| 566-784, gnl|canFam2|chr17 (63390468-63390628) | |
| 566-784, gnl|danRer3|chrUn (118747500-118747661) | |
| 566-784, gnl|dasNov1|scaffold_167312 (1724-1884) | |
| 566-784, gnl|echTel1|scaffold_316629 (122560-122402) | |
| 566-784, gnl|fr1|chrUn (156446436-156446595) | |
| 566-784, gnl|galGal2|chrUn (96992435-96992589) | |
| 566-784, gnl|hg17|chr1 (148050922-148051081) | |
| 566-784, gnl|Hg17|chr1 (148050941-148051159) | |
| 566-784, gnl|loxAfr1|scaffold_5758 (7462-7302) | |
| 566-784, gnl|mm7|chr3 (94908753-94908594) | |
| 566-784, gnl|Mm7|chr3 (94908732-94908514) | |
| 566-784, gnl|monDom2|scaffold_44 (4448205-4448362) | |
| 566-784, gnl|oryCun1|scaffold_116432 (846-1005) | |
| 566-784, gnl|panTro1|chr1 (129789454-129789596) | |
| 566-784, gnl|rheMac2|chr1 (129693031-129693190) | |
| 566-784, gnl|rn3|chr2 (189894438-189894279) | |
| 566-784, gnl|tetNig1|chr21_random (2428595-2428433) | |
| 566-784, gnl|xenTro1|scaffold_1732 (94997-94838) | |
| 891-1022, gnl|bosTau2|chr3 (16306530-16306399) | |
| 891-1022, gnl|Hg17|chr1 (148051855-148051986) | |
| 891-1022, gnl|Mm7|chr3 (94907715-94907584) | |
| 1091-1382, gnl|bosTau2|chr3 (16305375-16305077) | |
| 1091-1382, gnl|Hg17|chr1 (148052720-148053009) | |
| 1091-1382, gnl|Mm7|chr3 (94906935-94906653) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| cje (1.15664) | |
| ill (0.526778) | |
| eje (0.494169) | |
| cag (0.453583) | |
| nje (0.33184) | |
| sme (0.305437) | |
| che (0.272628) | |
| ssp (0.271039) | |
| cly (0.241284) | |
| eru (0.240096) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| cli (0.152812) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (1.15664) | |
| ill (0.526778) | |
| eje (0.494169) | |
| cag (0.453583) | |
| nje (0.33184) | |
| sme (0.305437) | |
| che (0.272628) | |
| ssp (0.271039) | |
| cly (0.241284) | |
| eru (0.240096) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| cli (0.152812) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |