Non-Coding RNA Search

Ss1.1-Mixn-0024i17.5

Sequence:


               
               GAGGATCAAGCCACAGTTGACTCAACAAAGACAAAAGCCAGCTACCACCTTCAACTGCTG
GCGCAGCTGCATGAAGCTGGTTGTCCCAAAGCCAGAAGCTGGCGGGAAAAATTCCTCATC
CTCAGCTTCTTATATGTAGCCAATCCTTTGAGGCAAGAGAGTGACAGCAATAGAGAACTA
CCCCTTGTCATTATCAGATGGGAGAGAAGAAGCGTGCAAGTGAGCCAAACACATTTTAGT
GTAATTATTTTTTCTTTCATTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTGCAATTAGCAAGCATGAGCAGAAAGGTAGAAACATATCCTTTT
TTCAATATACAGTTGTCAGATATTTTATGCATGCAAATCATGCTTTTGGCAGTGCAGTAG
TTCTTAAAAGTCGGCCAACTCCACCATAACCAAATTCTTGTATGGATAGACTAGCCCTGG
GCTGCTATATACATATTTGAAATGTTTGCTTGAAAACAAATTCCATCATACACACTAGGG
GTGGAGGGGAGGAGAAAAATGTCACAGCTCTACCATCTCTAAAAAGGTGTTTTTATGGTG
AATGTTTTGGGTTTAGATTTTGGATCCCCTGTCCCCCCCCAAGCATGATAGTTTTGGAGA
TTTGCTTGCTGTGTGAATTGACAAGCACTTTTACTGACAAAATGGTGAGGCTCAGTCAGA
ACCTCCGCCTCCCCACCAAAGACAGGGCAGTTCAGTGTTCAAATCAGTATTGGGGTGGGG
AATAATTGTGTACCTGTATATGAAAATGCCCTATGAGTGGAAGATTTTTTTCAAATTATT
TTTTGTCCCTATCTATATTGATTTATATATTACATATCACCATCTTTTTATATATAAAGA
TGCACATATAGACCTATATGTGTGTATATATACACACACACTCATATCCCCTAGTGTTGG
ATCATGAAGAGCTCTTCATGCATTCTTTGCAAAGGAGGTTATAAAGTTATGCCCTCAGAA
CATTTATAACTATAAGAATGTGCCAGTTAAAGTGCTCAACAGGAAATATGACAGTTTAAA
AGCATTGTAAAACTCACATAGCTTACTTCTCTCTCTAAAGTGCAACAAGGATGAATAGAA
TGGGCCAAGGTATGACAATTAATGGTTCTGCATGACCTAGCCACTGCTGGGGGTTTCCTT
CTATAACGTTGTCCTTGTGAAAACTTTGTGAAATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGATCAAGCCACAGTTGACTCAACAAAGACAAAAGCCAGCTACCACCTTCAACTGCTG
GCGCAGCTGCATGAAGCTGGTTGTCCCAAAGCCAGAAGCTGGCGGGAAAAATTCCTCATC
CTCAGCTTCTTATATGTAGCCAATCCTTTGAGGCAAGAGAGTGACAGCAATAGAGAACTA
CCCCTTGTCATTATCAGATGGGAGAGAAGAAGCGTGCAAGTGAGCCAAACACATTTTAGT
GTAATTATTTTTTCTTTCATTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTGCAATTAGCAAGCATGAGCAGAAAGGTAGAAACATATCCTTTT
TTCAATATACAGTTGTCAGATATTTTATGCATGCAAATCATGCTTTTGGCAGTGCAGTAG
TTCTTAAAAGTCGGCCAACTCCACCATAACCAAATTCTTGTATGGATAGACTAGCCCTGG
GCTGCTATATACATATTTGAAATGTTTGCTTGAAAACAAATTCCATCATACACACTAGGG
GTGGAGGGGAGGAGAAAAATGTCACAGCTCTACCATCTCTAAAAAGGTGTTTTTATGGTG
AATGTTTTGGGTTTAGATTTTGGATCCCCTGTCCCCCCCCAAGCATGATAGTTTTGGAGA
TTTGCTTGCTGTGTGAATTGACAAGCACTTTTACTGACAAAATGGTGAGGCTCAGTCAGA
ACCTCCGCCTCCCCACCAAAGACAGGGCAGTTCAGTGTTCAAATCAGTATTGGGGTGGGG
AATAATTGTGTACCTGTATATGAAAATGCCCTATGAGTGGAAGATTTTTTTCAAATTATT
TTTTGTCCCTATCTATATTGATTTATATATTACATATCACCATCTTTTTATATATAAAGA
TGCACATATAGACCTATATGTGTGTATATATACACACACACTCATATCCCCTAGTGTTGG
ATCATGAAGAGCTCTTCATGCATTCTTTGCAAAGGAGGTTATAAAGTTATGCCCTCAGAA
CATTTATAACTATAAGAATGTGCCAGTTAAAGTGCTCAACAGGAAATATGACAGTTTAAA
AGCATTGTAAAACTCACATAGCTTACTTCTCTCTCTAAAGTGCAACAAGGATGAATAGAA
TGGGCCAAGGTATGACAATTAATGGTTCTGCATGACCTAGCCACTGCTGGGGGTTTCCTT
CTATAACGTTGTCCTTGTGAAAACTTTGTGAAATTAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8VED7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8VED7_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-155, + strand, RNAz p=0.99253
               

               
               31-126, - strand, RNAz p=0.9969
               

               
               162-275, - strand, RNAz p=0.725673

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-155, + strand, RNAz p=0.99253
               

               
               31-126, - strand, RNAz p=0.9969
               

               
               162-275, - strand, RNAz p=0.725673

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of U11058, +
               

               
               5' of U11058, -
               

               
               5' of U11058, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of U11058, +
               

               
               5' of U11058, -
               

               
               5' of U11058, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-283, gnl|bosTau2|chr28 (24724186-24723905)
               

               
               1-283, gnl|canFam2|chr4 (30062620-30063508)
               

               
               1-283, gnl|dasNov1|scaffold_10347 (15167-15944)
               

               
               1-283, gnl|echTel1|scaffold_296363 (46255-47037)
               

               
               1-283, gnl|galGal2|chr6 (13047926-13047149)
               

               
               1-283, gnl|hg17|chr10 (78315224-78316051)
               

               
               1-283, gnl|Hg17|chr10 (78315875-78315600)
               

               
               1-283, gnl|loxAfr1|scaffold_44106 (4415-5270)
               

               
               1-283, gnl|mm7|chr14 (20964933-20965781)
               

               
               1-283, gnl|Mm7|chr14 (20965606-20965327)
               

               
               1-283, gnl|monDom2|scaffold_14 (5341998-5342949)
               

               
               1-283, gnl|oryCun1|scaffold_202463 (248740-247927)
               

               
               1-283, gnl|panTro1|chr8 (79590223-79591047)
               

               
               1-283, gnl|rheMac2|chr9 (60161898-60161078)
               

               
               1-283, gnl|rn3|chr15 (941780-940971)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-283, gnl|bosTau2|chr28 (24724186-24723905)
               

               
               1-283, gnl|canFam2|chr4 (30062620-30063508)
               

               
               1-283, gnl|dasNov1|scaffold_10347 (15167-15944)
               

               
               1-283, gnl|echTel1|scaffold_296363 (46255-47037)
               

               
               1-283, gnl|galGal2|chr6 (13047926-13047149)
               

               
               1-283, gnl|hg17|chr10 (78315224-78316051)
               

               
               1-283, gnl|Hg17|chr10 (78315875-78315600)
               

               
               1-283, gnl|loxAfr1|scaffold_44106 (4415-5270)
               

               
               1-283, gnl|mm7|chr14 (20964933-20965781)
               

               
               1-283, gnl|Mm7|chr14 (20965606-20965327)
               

               
               1-283, gnl|monDom2|scaffold_14 (5341998-5342949)
               

               
               1-283, gnl|oryCun1|scaffold_202463 (248740-247927)
               

               
               1-283, gnl|panTro1|chr8 (79590223-79591047)
               

               
               1-283, gnl|rheMac2|chr9 (60161898-60161078)
               

               
               1-283, gnl|rn3|chr15 (941780-940971)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               aor (0.390549)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               bla (0.124347)

	1-155, + strand, RNAz p=0.99253
	31-126, - strand, RNAz p=0.9969
	162-275, - strand, RNAz p=0.725673

	1-283, gnl\|bosTau2\|chr28 (24724186-24723905)
	1-283, gnl\|canFam2\|chr4 (30062620-30063508)
	1-283, gnl\|dasNov1\|scaffold_10347 (15167-15944)
	1-283, gnl\|echTel1\|scaffold_296363 (46255-47037)
	1-283, gnl\|galGal2\|chr6 (13047926-13047149)
	1-283, gnl\|hg17\|chr10 (78315224-78316051)
	1-283, gnl\|Hg17\|chr10 (78315875-78315600)
	1-283, gnl\|loxAfr1\|scaffold_44106 (4415-5270)
	1-283, gnl\|mm7\|chr14 (20964933-20965781)
	1-283, gnl\|Mm7\|chr14 (20965606-20965327)
	1-283, gnl\|monDom2\|scaffold_14 (5341998-5342949)
	1-283, gnl\|oryCun1\|scaffold_202463 (248740-247927)
	1-283, gnl\|panTro1\|chr8 (79590223-79591047)
	1-283, gnl\|rheMac2\|chr9 (60161898-60161078)
	1-283, gnl\|rn3\|chr15 (941780-940971)